Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01870 ATGGCTTCCGCCACCAAAGACTCAGATTTTGCATATTTGGAACACATTCAACAATACCTTCTTTTTGATGATTCCAACCTTCTTATTACATCAATAGATGATCAATCTTTACCAAGCCCTAAAAGTGACAACGATTCCAATACAACTGTAGAGGCGCGTGAAATAAGTGCACCTCCTACATGGAAGCGATACAGGGGCGTGAGGCGTAGGCCATGGGGTAAGTTTGCGGCAGAGATCCGAGATCCAAAGAAGAATGGTGCTAGAGTTTGGCTTGGAACTTATCTGACCGAGGAGGAAGCAGGGGGTGATGTTTAA 315 0.4476 MASATKDSDFAYLEHIQQYLLFDDSNLLITSIDDQSLPSPKSDNDSNTTVEAREISAPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGGDV 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01870 104 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Tsu04g01870 104 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Tsu04g01870 104 Pfam AP2 domain 63 100 IPR001471 GO:0003700|GO:0006355
Tsu04g01870 104 SUPERFAMILY DNA-binding domain 63 100 IPR016177 GO:0003677
Tsu04g01870 104 PANTHER DNA-BINDING DOMAIN 1 101 IPR044808 GO:0003700|GO:0009873
Tsu04g01870 104 CDD AP2 62 100 IPR001471 GO:0003700|GO:0006355
Tsu04g01870 104 SMART rav1_2 63 104 IPR001471 GO:0003700|GO:0006355
Tsu04g01870 104 MobiDBLite consensus disorder prediction 33 54 - -
Tsu04g01870 104 MobiDBLite consensus disorder prediction 33 55 - -
Tsu04g01870 104 Gene3D AP2/ERF domain 62 102 IPR036955 GO:0003700|GO:0006355
Tsu04g01870 104 ProSiteProfiles AP2/ERF domain profile. 63 104 IPR001471 GO:0003700|GO:0006355
Tsu04g01870 104 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01870 Tsu-Chr4 20081053 20082032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01870 63 101 AP2-EREBP Transcription Factor Family AT2G44840 87.179 2.00e-19 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g01870 AP2 3.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01870 K09286 - gmx:102663872 134.806