Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01868 atGCTTTATGTTGTATACCACTCTGGTGCTGCCATTATCAATGCACAGAGCCTTCTTATTACATCAACTGATGACCATGAATCATTACCAAGCGCTAAAAGTGACAACGATTCCGACACAATTGTAGATGCGCGTGAAATAAGTGCACCTCCTACATGGAAGCGATACAAGGGCGTGAGGCGTAGGCCATGGGGTAAATTCGCGGCAGAGATCCGAGATCCAAGGAAGAATGGTGCTAGAGTTTGGCTTGGAACTTATCTAACCGAGGAGGAAGCAGCTTTGGCTTACGACAAGGCTGCTTTCAAGATGCGTGGCCAAAAAGCCAAACTTAATTTTCCCCACCTCGTTGACTCTGATTTGTTGTCGTCATCAGAGCCAAAGAGGGAGGTGGTTTTGAAACGAGAGTCATCGGAGCCCTCTTCATCGGAGGGAAGTTATGAGTCAACAGCACCTGGGTCAAAGAGGAGAAGGGGCACGGTTGACCTACTTAATAAATTAGCCAAGAATAGAAGTCAAGCCATGGTGGTTGAAATTGGAAAGGCCTCACAAGCAAATGATGATTTTGAGCAATGGGGGAATGAGTTAAATGATTGCTCTCTTGTATGGGGCTCATAG 615 0.4618 MLYVVYHSGAAIINAQSLLITSTDDHESLPSAKSDNDSDTIVDAREISAPPTWKRYKGVRRRPWGKFAAEIRDPRKNGARVWLGTYLTEEEAALAYDKAAFKMRGQKAKLNFPHLVDSDLLSSSEPKREVVLKRESSEPSSSEGSYESTAPGSKRRRGTVDLLNKLAKNRSQAMVVEIGKASQANDDFEQWGNELNDCSLVWGS 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01868 204 SMART rav1_2 55 119 IPR001471 GO:0003700|GO:0006355
Tsu04g01868 204 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Tsu04g01868 204 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Tsu04g01868 204 MobiDBLite consensus disorder prediction 126 158 - -
Tsu04g01868 204 PANTHER DNA-BINDING DOMAIN 32 172 IPR044808 GO:0003700|GO:0009873
Tsu04g01868 204 Gene3D AP2/ERF domain 54 115 IPR036955 GO:0003700|GO:0006355
Tsu04g01868 204 CDD AP2 54 115 IPR001471 GO:0003700|GO:0006355
Tsu04g01868 204 PANTHER AP2-DOMAIN DNA-BINDING PROTEIN 32 172 - -
Tsu04g01868 204 ProSiteProfiles AP2/ERF domain profile. 55 113 IPR001471 GO:0003700|GO:0006355
Tsu04g01868 204 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Tsu04g01868 204 PRINTS Ethylene responsive element binding protein signature 95 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01868 Tsu-Chr4 20069151 20071574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01868 55 143 AP2-EREBP Transcription Factor Family AT2G44840 67.416 8.29e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu04g01868 AP2 6.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01868 K09286 - gmx:102663872 204.142