Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01860 ATGAGTGATTCTTCTGTGAAGAATTTGGCTATTACGGATAAGGTTCAAAAACCTGGTGGTTGTGCTGGCATTTTCTTTCAGCTTATTGATTGGAAGAAGAGACTTGTTAAGAAAAAGCTCTTCTCCAAGAAACTTCTCACTCCTGCTCGTGCAAAAAAGTTTAGGGGAGATGAAAAAATgccaaattccaaacttcacTTGATTGCTAATGAGAATAGTGGAGGTTTTCCAAAAGGTGGGAGTTATGGTGTAGATGTAGATCAAAAGAGGGAAATGCGAGTTCCGAGTTTGGTAGCTCGGTTGATGGGTCTAGATTCTATTCCAGCTTCGAAACGAGAGAAACCAAAGAAAGCTTTGTGTCTTGATTATAGCTGTGGCGATGAGAAAGAGTGTTTGGATAATGATTGTGAGTTGGATAGGCAAGGAAATGATTTGGAAATGAGAGTTGTAAAGCATGATTCAAGACCTCAGAAGCTTCAGAAAACAGGAGTGTGTGAGAGAAAGGCAGTGACTAGGTTTGGAGCCGAGGCCCTTCATATTAGAAGTGTTTTGTCGCGAGCTAAAAAGTATAACcacaataatcatcatcatccaaaACTTGCTCCTCCTTTAAAGAGTCCTAGAATTACTTCCGGAAAAAGTGCTTCTCGAAGCTCTAGATTAATTGGAGCGGCTGCCAAAATTTTGGAACCCGGACTGCAGGGGAGTAGAGGTAAAGGAACTCTTATGTATCATGCTTCCGCGTGTCCTCTTAAGACCAGCATTGTAATGGATGATGCTGGAAATAAGTTAGCGGTTATGCAAAATCAATCCTGTCATGTTTCCAGCACTTCGAAACCTTTAATTGGGCAGACTTCTTGCAAAAATTGTGGTAATTTGCTTGATGTAATTGACTGCAAGGAAGAGGTTAGGGGACCACCCGATGTTCCTCCACCGCTCGTTTCAGATGCAATCAATGCTACCTCGGTGGCATCATCATATAAGGGAAAGTCATTCACTCCTTCTCATGGACAAGAAAGAGATATTGTTCTTCTGAGAAGTCAGGAAAAGTTCTCATCTCATGTTGCTGATGAAGAGGGGAAGAATTATGCACAACAGTCGTGGAATGAACCGTCTACCGTAAGAATGTCAAGACCCTGTGAAGGTCCGGCTAAATGGAGTTCGTCATGCCAACCATTAAGAACCCGAGAGGATGATGCATCTTCTTTTGCATATAAACGCAAAACACAAGAACCAAAATTAAGTAGTGAAAGCTCTTCATCTGGATCTACAACGTGTAGTATGCAAGTAAAAAGAGTTTCATCATGTGCGAGCAGTGCAAGTGGGACTAAAGACTTTGTTGCTTTGAACAGAAACGCAAGTAGTAGAACGAGGATGAGGTCACCTACTAAAGTTGATAGTTCCAAATTTGATTTAGAGAAAAAACCTTGTAATAGACAGCATGAGTCCTTGTCTCATGTAAGGACATTAGAGAGGAAAAGGACACCACATGTCACACCACTCAAAGGCACAACTCCAGCTAATTCAGTTGGTTTGAAACCGAGAAATCTTCGTCGTGATGCAATTAGTGGGAAAAGGAGGGACTTTGACTCTTCCTCATCGATCACTTCCAATGTAAAAAATAGAGTTGGTCGAGGAGAACCGGTTAAGGTGAGCTACAATAGGAACAATGATGCAGTTTCATTCACATTTAGTCCCCCTTTAAAGCAAAAGATGGGAATGCTTGCTGCGGAGGAGGAAAAGATAAATTACAACAATGAGAGGAATAAGTACTTCCAATTCCAAAGACCTTCACCCTTGAACGTTGATGGTTTAGGTGCCTTTCTAGAAGAAAAGCTGAAGGAATTAACTTCTCAACAAAACGAGGTAGCTACAAGTGGTCTACCTCAAAAATCAAGTGCCGTGATTCTTCAAGAGCTGATATCTGCTCTAAGTTCAGAACATTTGATCTGTCACGATGGTCATATGCATAATGAAGATGCTAGTTTCCTTTGTGGAGCGAAGCAAGAAAACTTGTTAGGAACCTCTTGCAGTGGTAATCATCTCAGCCCTGGATCTGTTCTGGAAGCTTCGTTTTCTTCTAGTAGTCTTGACGAGAGCTTAGGGCGTGGTTTTCACCCTGATTCAATGAATTTCTCGTATAGTCAGCCAGAACAATCGGTGCATGATGATGAACTTCTAGATTCTGCAGCATCCTTCAATAAAGGAAGTATAAGCAAGATACTAGCTGTTATCATCAACCAAATTCCTATGGCATTACAATGTTTATATTCTTTCGGGACACAATTCACTAGAAGCAATTTCAACAATATGAAGGATGTTCTTTTGAATGCTGAATTAGTGCTTCGAATTTCAAATGAATGCAGCGAGGAAGAAATGCCGCAGCTTCTAATTCATCGGTTTCTTCTTAACGAATTGGACAATATGGCAGATGATGCTATGTGGACTGATTTTAACAGTCTTGTAGGTTACGATGATTCGAAATCAAGAAAGATGCTCAAGGGATTTGTCTTTGATTGTGTTATGGAATATCTAGAATCAAATTGTTGCCAGTATTTTACCTCTGGATTCAACGCATGGACAAAGCTACCGTTATGCGTAAAAGCCAAGACATTGGTTCAAGAGGTCAAGAGAGAAGTCAAGAAGTGTGCATGTATGACTGAGATGGTACCTGACGAAATAATTGAATGGGAGATGAGTCATTCCCTCGGGAAATGGAATGACTTCGATATTGAAGCATTTGAGGCTGGTGTTGATATTGATGGATGCATTCTTCATAATTTGGTTGATGAAGTTGTTGTAGACCTTGTAGGTTGCAAGTATAGTTCTTATTCCTTTTGA 2841 0.4006 MSDSSVKNLAITDKVQKPGGCAGIFFQLIDWKKRLVKKKLFSKKLLTPARAKKFRGDEKMPNSKLHLIANENSGGFPKGGSYGVDVDQKREMRVPSLVARLMGLDSIPASKREKPKKALCLDYSCGDEKECLDNDCELDRQGNDLEMRVVKHDSRPQKLQKTGVCERKAVTRFGAEALHIRSVLSRAKKYNHNNHHHPKLAPPLKSPRITSGKSASRSSRLIGAAAKILEPGLQGSRGKGTLMYHASACPLKTSIVMDDAGNKLAVMQNQSCHVSSTSKPLIGQTSCKNCGNLLDVIDCKEEVRGPPDVPPPLVSDAINATSVASSYKGKSFTPSHGQERDIVLLRSQEKFSSHVADEEGKNYAQQSWNEPSTVRMSRPCEGPAKWSSSCQPLRTREDDASSFAYKRKTQEPKLSSESSSSGSTTCSMQVKRVSSCASSASGTKDFVALNRNASSRTRMRSPTKVDSSKFDLEKKPCNRQHESLSHVRTLERKRTPHVTPLKGTTPANSVGLKPRNLRRDAISGKRRDFDSSSSITSNVKNRVGRGEPVKVSYNRNNDAVSFTFSPPLKQKMGMLAAEEEKINYNNERNKYFQFQRPSPLNVDGLGAFLEEKLKELTSQQNEVATSGLPQKSSAVILQELISALSSEHLICHDGHMHNEDASFLCGAKQENLLGTSCSGNHLSPGSVLEASFSSSSLDESLGRGFHPDSMNFSYSQPEQSVHDDELLDSAASFNKGSISKILAVIINQIPMALQCLYSFGTQFTRSNFNNMKDVLLNAELVLRISNECSEEEMPQLLIHRFLLNELDNMADDAMWTDFNSLVGYDDSKSRKMLKGFVFDCVMEYLESNCCQYFTSGFNAWTKLPLCVKAKTLVQEVKREVKKCACMTEMVPDEIIEWEMSHSLGKWNDFDIEAFEAGVDIDGCILHNLVDEVVVDLVGCKYSSYSF 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01860 946 MobiDBLite consensus disorder prediction 354 427 - -
Tsu04g01860 946 Pfam Domain of unknown function (DUF4378) 771 931 IPR025486 -
Tsu04g01860 946 MobiDBLite consensus disorder prediction 518 540 - -
Tsu04g01860 946 Pfam DUF761-associated sequence motif 87 112 IPR032795 -
Tsu04g01860 946 MobiDBLite consensus disorder prediction 399 413 - -
Tsu04g01860 946 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 9 938 - -
Tsu04g01860 946 MobiDBLite consensus disorder prediction 359 374 - -
Tsu04g01860 946 MobiDBLite consensus disorder prediction 451 470 - -
Tsu04g01860 946 PANTHER DNAA INITIATOR-ASSOCIATING PROTEIN 9 938 - -
Tsu04g01860 946 MobiDBLite consensus disorder prediction 192 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01860 Tsu-Chr4 19941576 19946119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01860 10 936 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 30.640 1.40e-74 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01860 - - aprc:113861902 1184.86