Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01857 ATGGCCAATGTTGATTTTCTTGAAAATTCCATTACTACCCCTACCTCCACCAATACTCTAAAGCTCTTTGGCATCAACATTCAAGAAGAAGCTTGTTTGGTTAACCAATTTCCACCACTATTAGAATCAGAATCATCTGAGCCATTGAATGGGAGAAAATTATACGAGTGCCAATATTGTTGTAGAGAATTCGCAAATTCACAAGCCTTAGGAGGACACCAAAATGCACACAAGAAAGAAAGACAACTTTTGAAACGTGCTCAAATGCAAGCTGCTCGTCGCTTTGTTCCTTCAAATTTCCATCACACATTCATGTCACAACCGCTGCCGCAACATCATTTCTTCGCCGGTGGTATACCGTCTCAGCCACCTCAAGCGTCGTGGTTATACATGACACCTGAAGTGGGTTCAAGAACTTTTTTAGCTCCTGTTGCGGGGTTTGATGGAAGCACTCATCACCATAGTTCTAATTTTGGTGGTTTCATTAGTGGTGATTGTAGTGAACAAGGGTTTGGTTTGAATTTACATCTTGGCCTATAA 540 0.413 MANVDFLENSITTPTSTNTLKLFGINIQEEACLVNQFPPLLESESSEPLNGRKLYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMQAARRFVPSNFHHTFMSQPLPQHHFFAGGIPSQPPQASWLYMTPEVGSRTFLAPVAGFDGSTHHHSSNFGGFISGDCSEQGFGLNLHLGL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01857 179 PANTHER ZINC FINGER PROTEIN 5 1 179 IPR044299 GO:0010090
Tsu04g01857 179 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Tsu04g01857 179 Gene3D Classic Zinc Finger 39 105 - -
Tsu04g01857 179 PANTHER ZINC FINGER PROTEIN 6-LIKE 1 179 - -
Tsu04g01857 179 SUPERFAMILY beta-beta-alpha zinc fingers 51 82 IPR036236 -
Tsu04g01857 179 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01857 Tsu-Chr4 19930899 19931438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01857 15 130 C2H2 Transcription Factor Family AT1G67030 49.265 1.49e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01857 - - gmx:100500337 145.206