Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01855 ATGACAAACTCATTTCGGGACAAATTAGGTCAAGGGGGATACGGTGTTGTTTACAAAGCAAGATTACCTGATGGACGTCAAGTGGCAGTGAAAGTGATAAACGAGTCAAAGGGAAATGGAGAGGAATTCATAAATGAAGTAGCGAGTATTAGTAGAACATCACATGTGAACATCGTTTCGCTTTTAGGTTTTTGTTATGAGAACAAAAGAGCACTAATATATGAATTCATGTCCAATGGATCATTGGATAAGTTTATCCTTAAAACAGGATTTTCTTATGCAATTTGTAGTTTGGATTGGAACACAATGTACCAAATTGCAATCGGCGTTGCCAAAGGACTAGAATACTTGCATCAAGGACGTATTTCAAGAATTTTGCATCTTGATATTAAACCCCAAAACATTCTTTTGGGTGAagatttttgtccaaaaatatCCGATTTTGGACTAGCTAAAAAATGCCTAAGGAATAATAGTAATGTGTCTATACTTGGCACAAGAGGAACCGTTGGATACATAGCACCAGAAGTATTTAGCCGAATATTTGGTGGAGTTTCTCACAAATCTAATGTATATAGTTATGGTATGTTAATTCTAGAAATGATTGGAGGCAGAAAGAATTATGATACTGGAGGTTCATGTACTTCTGAAATGTACTTTTCAGACTGGATTTATAAGGATCTTGAACAAGGTAACAACTTCGAGAATAGTTTGACAAATTCAGAGGAAGAAAATGATATGGTGAGAAAGATTACTATGGTAAATCTATGGTGCATTCAAACAAATCCATCACATAGACCATCAATGAGTAAAGTAATAGAAATGATGCAAGGGCCACTTCAATCGGTGTCATATCCTCCAAAGCCCTTTCTTATATTCTCCTAA 885 0.3503 MTNSFRDKLGQGGYGVVYKARLPDGRQVAVKVINESKGNGEEFINEVASISRTSHVNIVSLLGFCYENKRALIYEFMSNGSLDKFILKTGFSYAICSLDWNTMYQIAIGVAKGLEYLHQGRISRILHLDIKPQNILLGEDFCPKISDFGLAKKCLRNNSNVSILGTRGTVGYIAPEVFSRIFGGVSHKSNVYSYGMLILEMIGGRKNYDTGGSCTSEMYFSDWIYKDLEQGNNFENSLTNSEEENDMVRKITMVNLWCIQTNPSHRPSMSKVIEMMQGPLQSVSYPPKPFLIFS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01855 294 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
Tsu04g01855 294 SMART serkin_6 3 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01855 294 PIRSF ILK 3 284 - -
Tsu04g01855 294 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01855 294 Pfam Protein kinase domain 7 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01855 294 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 292 IPR045874 GO:0004672
Tsu04g01855 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tsu04g01855 294 SUPERFAMILY Protein kinase-like (PK-like) 5 283 IPR011009 -
Tsu04g01855 294 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 292 - -
Tsu04g01855 294 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Tsu04g01855 294 Gene3D Transferase(Phosphotransferase) domain 1 77 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01855 Tsu-Chr4 19915372 19916256 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01855 1 291 Receptor kinase-like Gene Family AT4G18250 58.667 8.62e-121 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu04g01855 Pkinase 5.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01855 - - cam:101489592 507.294