Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01854 ATGAAGATATTCATTCATGGATATGTTTTGTTATCCAACCTCTTACTAATAATTTCGATTGCTGCTATTACTGCTGCAGAATACAATGAAGCAGATTACATGTCAGACCTTTTGAAAGCACTAACCCCAACTCCCACAGGATGGTCTAACAAAACACACTACTGCAAATGGAAAGGCATCTCATGCAACTCTACTAGTCAAGCTGTTACCTCCATCATCCTTCCATCAAGTTCACTCACTGGGACACTCCCTCCCTATCTCTACACTCTCACTAATCTCACCCATATTGATCTCCACAACAACTCACTCAATGGTCCTTTGCCTTATTTTGGTAGCCTCTACTTGCTCCAAACTGTATCCCTTGGTCACAATAACTTCACCTCTTATCCATACGATTGCATTCAATACTTATATGATCTGAGAACCCTCAACCTAAGCAATAACTTGAATCTCTCCAACTGGGTATTTCCTATGGATGATCTAAGGAACTCCGTGTATTTGGACACCCTTGATCTTGAAGCTTCGAATATGATTGGTTCATTACCATCCGAAATGTTTGATTGGTTTCCAAATTTGCATACTTTTATTATTTCTCACAACCAAATTGATGGAAATCTACCCGAGTCTCTAGGGAAATCAACAGTGAGAAATTTGCGGCTTAACAACCAAGGGGGGTCTGGGTTTCGGGGTACAATTAACTTTATTTCTTCCATGGGTAATTTGGCTCAAGCGTGGCTTCAAAATAACAACTTCACGGATCGAATTCCCAACATGTCCAATTGTACAAATTTGTCTGATTTGCAGCTTCAGTCGAATAGCTTAACTGGTTTGATCCCACCTTCATTACTCACTCTACCTAACTTGAGAATCATCTCTTTGGGTGACAATAGGCTTCAAGGACCGATACCTGTGTTTCACAAGGGTGTTAGAGCAACTTTGGAACCAAATTACTTTTGTCGAAGCGATGTTGGACCTTGTGATCCCCATATTATGATTTTGCTTGAAATTTTTGAAGCTTTTAGATCTCCTTATTTTGTTCTGCCGCCAATCACTGGAAACAATGCTTGTACCATATCGCCCATATGGTTATCTAGTAATATCAATGGAATATGGGTAAAGGACGGAGTGTTTATGATTAAGTGTGAAAGAGGGAAGATTGTTAGTGTTGAGATCTGGAATTATGGTTTAAAAGGAACTATTTCTCCTGCATTTTCCAATTTAACAAGTTTAGTGAACTTAACTCTTTCCGGAAATTCTTTGAATGGTTCAATACCATCGAGTCTTACAACTTTGTCGAAACTCCAACTTCTTGATGTTTCTAATAATAATCTATCAGGAGTAATTCCCATATTTTCATCTAGGGTTAAGTTAAATACCACGGGCAACGTTTTTCTTATGCAAAATAAGTTTAGACAAGGTGGAGGTGAAAATGCAACTATTGGAGGGACATCAATGATTATTgttggatttgtcattattattGCGTTGGTTATTTGTAAATGTCAGAGATATTCAGAAGTTAAAAGAATGACAAACTCATTCCGAGACAAATTAGGTCAAGGAGGATATGGTATTGTTTACAAAGCAAGTTTACCTGATGGACGTCAGGTGGCAGTGAAAGTGATAAACGAGTCAAAGGGAAATGGAGAAGAATTCATAAATGAAGTAGCTAGTATTAGTAGGACGTCACATGTGAACATCGTTTCACTTTTGGGGTtttgttttgagaaaaaaaGAGCACTAATATATGAATTCATGTCCAATGGATCATTGGATAATTTTATCCTTAAAAGAGGATTTCCAGATGCAATTTGTAGTTTGGATTGGAATAAAATGTACAATATTGCCATGGGCATTGCTCGAGGACTAGAATACTTGCATCAAGGATGTATTTCAAGAATTTTGCATCTTGATATCAAACCCCAAAACATTCTTTTGGATGAAAACTTTTGTCCGAAAATATCTGATTTTGGACTAGCTAAAATATGCCAAAGGAATGATAGTGTCGTGTCTATACTTGGTACAAGAGGAACTATAGGATACATTGCACCAGAAGTATTCAGTCGAACATATGGTGGTGTTTCTCACAAGTCTGACGTATACAGTTATGGTATGTTAATTCTAGAAATGATTGGAGGAAGAAAGAATTATGACACTGGAGGTTCATGTACTTCTGAAATGTACTTTCCAGACTGGATTTATAAGGATCTTGAGCAAGGTAATAACCTTGAGAATTGTTTAGCAAATTCAGATGAAGAAAATGACGTGGTGAGAAAGATTACTATGGTGAGTCTATGGTGCATTCAAACGAATCCATCAGATAGACCCTCAATGAGTAAGGTATTAGAAATGCTACAAGGACCACTTCAGTCTGTTCCATATCCTCCAAAGCCTTTCTTAAATTCTCCTGAAAGACCATCATTACAAACTTCATATGTGTCTTCCAGCAATTTGTTAGAGACAAATTCAGCTAAGACACCGGTGTAA 2487 0.3711 MKIFIHGYVLLSNLLLIISIAAITAAEYNEADYMSDLLKALTPTPTGWSNKTHYCKWKGISCNSTSQAVTSIILPSSSLTGTLPPYLYTLTNLTHIDLHNNSLNGPLPYFGSLYLLQTVSLGHNNFTSYPYDCIQYLYDLRTLNLSNNLNLSNWVFPMDDLRNSVYLDTLDLEASNMIGSLPSEMFDWFPNLHTFIISHNQIDGNLPESLGKSTVRNLRLNNQGGSGFRGTINFISSMGNLAQAWLQNNNFTDRIPNMSNCTNLSDLQLQSNSLTGLIPPSLLTLPNLRIISLGDNRLQGPIPVFHKGVRATLEPNYFCRSDVGPCDPHIMILLEIFEAFRSPYFVLPPITGNNACTISPIWLSSNINGIWVKDGVFMIKCERGKIVSVEIWNYGLKGTISPAFSNLTSLVNLTLSGNSLNGSIPSSLTTLSKLQLLDVSNNNLSGVIPIFSSRVKLNTTGNVFLMQNKFRQGGGENATIGGTSMIIVGFVIIIALVICKCQRYSEVKRMTNSFRDKLGQGGYGIVYKASLPDGRQVAVKVINESKGNGEEFINEVASISRTSHVNIVSLLGFCFEKKRALIYEFMSNGSLDNFILKRGFPDAICSLDWNKMYNIAMGIARGLEYLHQGCISRILHLDIKPQNILLDENFCPKISDFGLAKICQRNDSVVSILGTRGTIGYIAPEVFSRTYGGVSHKSDVYSYGMLILEMIGGRKNYDTGGSCTSEMYFPDWIYKDLEQGNNLENCLANSDEENDVVRKITMVSLWCIQTNPSDRPSMSKVLEMLQGPLQSVPYPPKPFLNSPERPSLQTSYVSSSNLLETNSAKTPV 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01854 828 Gene3D Ribonuclease Inhibitor 330 469 IPR032675 -
Tsu04g01854 828 MobiDBLite consensus disorder prediction 803 828 - -
Tsu04g01854 828 SUPERFAMILY Protein kinase-like (PK-like) 498 785 IPR011009 -
Tsu04g01854 828 Pfam Leucine rich repeat N-terminal domain 33 63 IPR013210 -
Tsu04g01854 828 SMART serkin_6 512 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01854 828 MobiDBLite consensus disorder prediction 793 828 - -
Tsu04g01854 828 Gene3D Ribonuclease Inhibitor 32 324 IPR032675 -
Tsu04g01854 828 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Tsu04g01854 828 PANTHER TYROSINE KINASE FAMILY PROTEIN 19 825 - -
Tsu04g01854 828 Pfam Protein kinase domain 516 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01854 828 PANTHER RUST RESISTANCE KINASE LR10-RELATED 19 825 IPR045874 GO:0004672
Tsu04g01854 828 SUPERFAMILY L domain-like 48 458 - -
Tsu04g01854 828 Gene3D Phosphorylase Kinase; domain 1 494 585 - -
Tsu04g01854 828 ProSiteProfiles Protein kinase domain profile. 512 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01854 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Tsu04g01854 828 Gene3D Transferase(Phosphotransferase) domain 1 586 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01854 Tsu-Chr4 19896514 19900055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01854 474 823 Receptor kinase-like Gene Family AT4G18250 52.493 3.89e-128 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu04g01854 Pkinase 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01854 - - cam:101489592 993.416