Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01853 ATGACAAACTCATTCCGGGACAAATTAGGTCAAGGAGGATACGGTGTTGTTTACAAAGCAAGTTTACCTGATGGACGTCAAGTGGCGGTGAAAGTGATAAACGAGTCAAAGGGAAATGGAGAAGAATTCATAAATGAAGTAGCGAGTATTAGTAGAACCTCACATGTGAACATCGTCTCACTTTTAGGTTTTTGTTATGAAAACAAAAGAGCACTAATATATGAATTCATGTCCAAAGGATCATTGGATAAGTTTATCCTTAAAAGAGGATGTCCTGATGCAATTTGTAGTATGGATTGGAACACAATGTACCAAATTGCAATTGGCATTGCTCGAGGACTAGAATACTTGCATCAAGGATGTATTTCAAGAATTTTGCATCTTGATATTAAACCCGAAAACATTCTTCTGGATGAAGATTTTTGCCCAAAAATCTCTGATTTTGGACTAGCTAAAATTTGCCAAAGAAAGGATAGTATTGTGTCCATGCTTGGAACAAGAGGAACTATAGGATACATAGCACCAGAAGTATTTAGCCGAACATATGGTGGAGTTTCTCACAAGTCTGATGTATACAGTTATGGTATGTTAATTCTAGAAATGATTGGAGGAAGAAAGAATTATGACACTGGAGGTTCATGTACTTCTGAAATGTACTTTCCAGACTGGATTTACAAGGATCTTGAACAAGGTAATAATAATCTTGAAAATTCTTTAGCAAATTCAGATGAAAAAAATGACATGGTGAGAAAAATTATTATGGTGAGTCTATGGTGCATTCAAATCAATCCATCAGATAGACCATCAATGAGTAAAGTAATAGAAATGCTACAAGGACCACTTCAGTTGGTGTCATATCCTCCAAAGTCTTTCTTACATTCTCCTGAAGTGCCATCATTACAAACTTCATATGCGTCTTCTAGCAATTTCTCGGAGACAAATTCAACAAAGACAATGGTGAAAATGTGA 969 0.3581 MTNSFRDKLGQGGYGVVYKASLPDGRQVAVKVINESKGNGEEFINEVASISRTSHVNIVSLLGFCYENKRALIYEFMSKGSLDKFILKRGCPDAICSMDWNTMYQIAIGIARGLEYLHQGCISRILHLDIKPENILLDEDFCPKISDFGLAKICQRKDSIVSMLGTRGTIGYIAPEVFSRTYGGVSHKSDVYSYGMLILEMIGGRKNYDTGGSCTSEMYFPDWIYKDLEQGNNNLENSLANSDEKNDMVRKIIMVSLWCIQINPSDRPSMSKVIEMLQGPLQLVSYPPKSFLHSPEVPSLQTSYASSSNFSETNSTKTMVKM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01853 322 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 316 - -
Tsu04g01853 322 Gene3D Transferase(Phosphotransferase) domain 1 77 285 - -
Tsu04g01853 322 ProSiteProfiles Protein kinase domain profile. 3 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01853 322 MobiDBLite consensus disorder prediction 303 322 - -
Tsu04g01853 322 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tsu04g01853 322 SMART serkin_6 3 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01853 322 Coils Coil 225 245 - -
Tsu04g01853 322 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Tsu04g01853 322 PIRSF ILK 3 284 - -
Tsu04g01853 322 SUPERFAMILY Protein kinase-like (PK-like) 5 311 IPR011009 -
Tsu04g01853 322 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
Tsu04g01853 322 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 316 IPR045874 GO:0004672
Tsu04g01853 322 Pfam Protein kinase domain 7 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01853 Tsu-Chr4 19879220 19880188 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01853 1 314 Receptor kinase-like Gene Family AT5G38280 58.255 1.89e-128 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu04g01853 Pkinase 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01853 - - cam:101489592 551.592