Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01847 ATGACAAACTCATTCCGAGATAAATTAGGTCAAGGAGGATATGGTATTGTGTACAAAGCAAGCTTACCTGATGGTCGTCAAGTGGCAGTGAAAATTATAAACGAGTCAAAGGGAAATGGAGAAGAGTTCATTAATGAAGTTGCTAGCATTAGTAGAACGTCACATGTGAACATCGTCGCACTTTTGGGTTTTTGTTATGAGAACAAAAGAGCACTAATATATGAATTCATGCCTAAAGGATCATTAGATAACTTCATTTGTAAAAGTGGATTTCCTGATGTTACTTGTAATTTGGATTGGAAAACTATGTACCAAATTGCAATCGGCATTGCTCGAGGCCTAGAATACTTGCATCAAGGATGTAGTTCACGAATTTTACATCTTGACATCAAACCCCAAAACATTCTTTTGGATGAAGATTTTTGCCCAAAAATCTCTGATTTTGGATTGGCTAAAATATGTCAAAGAAAGGATAGTATTGTTTCCATGATGGGGACAAGAGGAACTATTGGATACATAGCACCAGAAGTATTTAGCCGAACATATGGTGGAGTTTCTTACAAGTCTGATGTATACAGCTATGGCATGTTAATCATAGAAATTATTGGAGGAAGAAAGAATTATGACACAGGAGGGTCATGTACTTCTGAGATGTTCTTTCCAGATTGGATTTATAAGGATCTCGAGATAAGTGATAATGTTGTAAATTCTGCAGCAAATTCAGAGGAAGAAAACAATATAGTGAGAAAGATTACCATGGTTAGTCTATGGTGCATTCAAACAAATCCGTCAGATAGACCACCAATGAGTCAAGTATTAGAAATGCTACAAGGTCCACTTGAATCAGTGCCATATCCTCCAAAGCCTTTCTTATATTCTTCTGAAATGCCATCATTACAAATTTCATACGAGTCTTCCAACAATTTGTTAGATACAAATTCAATTCCTGAACTGGAGAATGATTCtagataa 972 0.358 MTNSFRDKLGQGGYGIVYKASLPDGRQVAVKIINESKGNGEEFINEVASISRTSHVNIVALLGFCYENKRALIYEFMPKGSLDNFICKSGFPDVTCNLDWKTMYQIAIGIARGLEYLHQGCSSRILHLDIKPQNILLDEDFCPKISDFGLAKICQRKDSIVSMMGTRGTIGYIAPEVFSRTYGGVSYKSDVYSYGMLIIEIIGGRKNYDTGGSCTSEMFFPDWIYKDLEISDNVVNSAANSEEENNIVRKITMVSLWCIQTNPSDRPPMSQVLEMLQGPLESVPYPPKPFLYSSEMPSLQISYESSNNLLDTNSIPELENDSR 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01847 323 SMART serkin_6 3 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01847 323 SUPERFAMILY Protein kinase-like (PK-like) 5 276 IPR011009 -
Tsu04g01847 323 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 315 - -
Tsu04g01847 323 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 315 IPR045874 GO:0004672
Tsu04g01847 323 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
Tsu04g01847 323 PIRSF ILK 3 283 - -
Tsu04g01847 323 Gene3D Transferase(Phosphotransferase) domain 1 77 283 - -
Tsu04g01847 323 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tsu04g01847 323 Pfam Protein kinase domain 7 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01847 323 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01847 323 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01847 Tsu-Chr4 19800924 19801895 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01847 1 311 Receptor kinase-like Gene Family AT4G18250 55.891 6.27e-129 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu04g01847 Pkinase 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01847 - - cam:101489592 555.444