LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g01842	ATGAAGATATTACACCAACAATCTGTTTTGTACTACTTTTCCATCCTCTTATTCATTGTTATTACCGTTGTTATTGTTAATGGAAACGATGAAGAAGATTACATGTCTCAACTTTTGAAAACACTAACCACAACTCCCATAAACTGGTCTAGCAACACTCACTATTGCAACTGGACAGGCATAGATTGTCAATTTGATCGAGTTGTGGCCATCAAGCTCCCATCAAGCTCACTCTCTGGGAGACTGCCTCCCTATCTCAACAGTACTCTCATTAGTCTCACTCACATCGATCTCCACAACAACTCACTCAATGGTCCTTTGCCTTATTTTAGTAACCTCGACTTGCTCGAAATTGTGTCCCTTGGTCACAATAAATTCTCCTCCGTCCCAGAAAGTTGCTTTGAATACACACCTGATCTGAGAACCCTCAATCTTAGCAATAACTTGCATCTCACCGGCTGGGAATTTCCTTTGGTTGATTTCAAAACCTCCGCGTATTTGGACACCCTGGATCTCGAAGCTACGAATATGATAGGCCAATTAGATCCGAAAACATTCTTGTGGTTTGTAAATTtgcatactttttttatttctcacaACAAAATACATGGAAATTTACCCCAATCTCTCGGGCAATCTCCAATAAGGTATTTACAGCTTAACAACAATAGATTTGAGGGTACAATTTCCGTTATATCAACCATGAGTAATTTGTCTCAAGCGTGGCTTCACAGTAACAAGTTCACGGGCCGAATTCCAAGCATGTCCAATTGTACTAATTTGTCTGATTTGCAGCTTCAGTCAAATTTCTTAATTGGTTTGATCCCACCTTCCTTGCTTTCTCTATCTAGCTTGAACATCATCtctttggaacaaaatatgctTCGCGGACCAATACCTGTGTTTCACAAGGGTGTTAAAGCAACTTTGGAACCAAATAACTTTTGTCGAAGCGATGTTGGACCTTGTGATCCCCAAGTTATGATTTTGCTTGAAATTTTTGAAGCTTTTGATGATCCTTATAATGTTTTCTCGATTGAAGGGAACAATGCTTGTACCGGAGGGAAATGGACCGATATATCGCCCAACCGGGTCTTGATTAGGTGTGAAAGAGGAAAAATTGTTAGTTTTAAGATCTGGAATATTGCTCCTTTAACAGGAACCATCTCTCCCACATTTTCTAATTTAACAAGTCTAGTGAACTTGACTCTTGTTGGCATTAATTTGAATGGTTCAATACCACACAGCCTTACAACTCTGCCTGAACTTCAGCTTCTTGATGTTTCTAATAATAATCTATCAGGAGTAGTTCCCAAATTTGCATCGAAGGTTAAGTTAAACACCACAGGCAATCCTTCACTTGTCCAAAATATGACTACGCAAGGTGGAGGTGAAAATGCAACTGCTTCAGGTGATGTTGAAACTAGAGGTTCATCTAAAGCAAGCCTTAGACCTGTAATTTGGATTGCAGGGGCTTCCTTGATAAGTGTTGGGTTTGTTATACTTATTGTGATTATTTGTAAACGCAAGAGGTATCCTATTTTAGTACAGTGGTGGTTCTTCAGGAAAACAAAAAACTCCACTGACCACGATGTGGAGGATTTCAtacaaagatttaatttgtCAGTGCCAATCAAGCAATATAGATATGCAGAAGTGAAAAGAATGACAAACTCATTCCGAGATAAATTAGGTCAAGGAGGATATGGTGTTGTGTACAAAGCAAGCTTACCTGATGGTCGTCAAGTGGCAGTGAAAATTATAAACGAGTCAAAGGGAAATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACGTCACATGTGAACATCGTCGCACTTTTGGGTTTTTGTTATGAGAACAAAAGAGCACTAATATATGAATTCATGCCCAAAGGATCATTAGATAACTTCATTTGTAAAAGTGGATTTTCTGATGTTACTTGTAATTTGGAATGGAAAACAATGTACCAAATTGCAATCGGCATTGCTCGAGGTCTAGAATACTTGCATCAAGGATGTATTTCAAGAATTTTGCATCTTGACATCAAACCTCAAAACATTCTTTTGGATGAAGATTTTTGCCCAAAAATCTCTGATTTTGGACTTGCtaaaatatgccaaagaaaggaTAGTATTGTTTCCATGTTAGGCACAAGAGGAACTATTGGATTCATAGCACCTGAAGTATTTAGCCGAACATATGGTGGAGTTTCTCACAAGTCTGATGTATACAGTTATGGAATGTTAATCATAGAAATGATTGGAGGAAGAAAGAATTATGACACAAGAGGGTCATGTACTTCTGAAATGTTATTTCCAGACTGGATTTATAAGGATCTCGAGCTAAGTAATAACTTTGAAAATTGTTTATCAAATTCAGAGGAAGAAAATGATACGGTGAGAAAGATTACTATGGTTAGTCTATGGTGCATTCAAACAAATCCATCGGATAGACCATCGATGAGTAAAGTATTAGAAATGCTACAAGGGCCACTTCAATCAGTGCCATATCCTCCAAAGCCTTTCTTATATTCATCTGAAATGCCATCACTACAAATTTCATATGAGTCTTCCAACAATTTGTTAGAGACAAATTCAATACCTTGA	2616	0.3689	MKILHQQSVLYYFSILLFIVITVVIVNGNDEEDYMSQLLKTLTTTPINWSSNTHYCNWTGIDCQFDRVVAIKLPSSSLSGRLPPYLNSTLISLTHIDLHNNSLNGPLPYFSNLDLLEIVSLGHNKFSSVPESCFEYTPDLRTLNLSNNLHLTGWEFPLVDFKTSAYLDTLDLEATNMIGQLDPKTFLWFVNLHTFFISHNKIHGNLPQSLGQSPIRYLQLNNNRFEGTISVISTMSNLSQAWLHSNKFTGRIPSMSNCTNLSDLQLQSNFLIGLIPPSLLSLSSLNIISLEQNMLRGPIPVFHKGVKATLEPNNFCRSDVGPCDPQVMILLEIFEAFDDPYNVFSIEGNNACTGGKWTDISPNRVLIRCERGKIVSFKIWNIAPLTGTISPTFSNLTSLVNLTLVGINLNGSIPHSLTTLPELQLLDVSNNNLSGVVPKFASKVKLNTTGNPSLVQNMTTQGGGENATASGDVETRGSSKASLRPVIWIAGASLISVGFVILIVIICKRKRYPILVQWWFFRKTKNSTDHDVEDFIQRFNLSVPIKQYRYAEVKRMTNSFRDKLGQGGYGVVYKASLPDGRQVAVKIINESKGNGEEFINEVASISRTSHVNIVALLGFCYENKRALIYEFMPKGSLDNFICKSGFSDVTCNLEWKTMYQIAIGIARGLEYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQRKDSIVSMLGTRGTIGFIAPEVFSRTYGGVSHKSDVYSYGMLIIEMIGGRKNYDTRGSCTSEMLFPDWIYKDLELSNNFENCLSNSEEENDTVRKITMVSLWCIQTNPSDRPSMSKVLEMLQGPLQSVPYPPKPFLYSSEMPSLQISYESSNNLLETNSIP	871

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g01842	871	ProSitePatterns	Protein kinases ATP-binding region signature.	564	586	IPR017441	GO:0005524
	Tsu04g01842	871	ProSiteProfiles	Protein kinase domain profile.	558	846	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g01842	871	MobiDBLite	consensus disorder prediction	455	476	-	-
	Tsu04g01842	871	PANTHER	TYROSINE KINASE FAMILY PROTEIN	23	870	-	-
	Tsu04g01842	871	SUPERFAMILY	L domain-like	51	446	-	-
	Tsu04g01842	871	Gene3D	Phosphorylase Kinase; domain 1	522	631	-	-
	Tsu04g01842	871	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	680	692	IPR008271	GO:0004672\|GO:0006468
	Tsu04g01842	871	SMART	serkin_6	558	835	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g01842	871	Gene3D	Ribonuclease Inhibitor	32	323	IPR032675	-
	Tsu04g01842	871	SUPERFAMILY	Protein kinase-like (PK-like)	536	831	IPR011009	-
	Tsu04g01842	871	Pfam	Leucine rich repeat N-terminal domain	37	63	IPR013210	-
	Tsu04g01842	871	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	23	870	IPR045874	GO:0004672
	Tsu04g01842	871	Pfam	Protein kinase domain	562	829	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu04g01842	871	Gene3D	Ribonuclease Inhibitor	325	458	IPR032675	-
	Tsu04g01842	871	Gene3D	Transferase(Phosphotransferase) domain 1	632	838	-	-
	Tsu04g01842	871	SMART	LRR_typ_2	420	442	IPR003591	-
	Tsu04g01842	871	SMART	LRR_typ_2	113	136	IPR003591	-
	Tsu04g01842	871	SMART	LRR_typ_2	90	112	IPR003591	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g01842	Tsu-Chr4	19755714	19761372	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g01842	483	866	Receptor kinase-like Gene Family	AT4G18250	50.750	3.47e-129	402

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Tsu04g01842		Pkinase	1.7e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g01842	-		-	cam:101489592	1072.77