Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01841 TCTACCGCAAGAATGAAACCTCTGTTTCAacgttcttttcttttttacttttatgcCATTGCAATCTTAATCCTCTCAATCTTCGATATTCTAGCATGTATTCGCGAGGATGATAACCAATACACCAACTGCAAGAAAGCTTTTAAGTGTGGAAACAATATCTCAAATCGTCGTATCCATTACCCATTCTGGGGAAAAAATAGAGAGCAGTATTGTGGCGTTTCTAATGATCCAAATATGGAGCTTACATGCGAAGGAAATGTTTCAAAGATAACAATAAATAGCATCAAATACCGTATTCTTAAATGGTATAATACGGCACAAAAACTCACAGTTGCCAGAGACGATTACTGGAGTGGTATTTGTGCTGTGAATGTGTGTGATAATCATAAGAACAGCACATTCGATGATAACTCGCTGTTTCAACGTGATGGTGATGTTTCTTCTCAATTAAATTTGTTATACAATTGCGATACAAATCAATCGAGTAGTATGATTTTTAGTACTACCTGCAATAATATTAAAGTTGTGTACACCCTTGCGGATCCTGGTTCGGTCACATGTACTCCAACTGTTATTGTAGAGGTTCCAATTATGGGAAACAAAGTTGCAGGAAATGCAACTGTGAATTCTATAAACCAAGCATTACAAGGCGGTTTTGATTTGAAATGGACTGGAAATTATGAAGAGTGCAAAGGGTGCGTTGCGTCTGGTGGAACGTGTGGCAACAATGGAGGAAGTGAATTCAGATGTTTCTGCAAAGATGGACCTTATACAACTACATGCCTTTCGGAAAAGGCCCCGTCCTCAGGTAAGTGTGCTGCAGCTGCTGGATTTGGAGTAATCGTGTTCATTATAATTATGATCAGTTGTCGCCTTAAAAGGGGTACCGGAAGACAACAATCATGCCTTATCCCACTAAATATTttcagagaaagaagaaaacttgTTGACAACAATGTCGAGGTTTTCATGCGAAGTTATAACTTATCCATGCCAAGAAGATATAGTTATACAGAAGTAAAAAGGATCACTAACTCGTTCCAAGATAAATTAGGCCAAGGAGGATATGGTGTTGTGTACAAAGCAAGTTTATCCGATGGTCGTCAAGTGGCGGTGAAAGTAATAAACGAGTCAAAGGGAAATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACATCACACATGAACATTGTGTCACTTTTAGGCTATAGTTATGAGGTGAACAAAAGAGCACTAATATATGAATTCATGTCAAAAGGATCATTGGATAAGTTCATCTACAAAAGTGAGTTTCCTAATGCtatttgtgattttgattggAACACTTTGTTCCAAATTGCAATTGGCATTGCTAGAGGTCTAGAGTACTTGCATAATGGATGTAGTTCAAGGATTCTGCATCTTGATATAAAGCCTCAAAACATTCTTTTAGATGAagatttttgtccaaaaatcTCTGATTTTGGACTAGCTAAAATATGTCAAAGAAAGGACAGTATTGTTTCAATACTAGGGACAAGAGGAACTATAGGATATATGGCACCAGAAGTATTTAATAGAGCATTTGGTGGAGTTTCTTATAAATCTGATGTATACAGTTATGGCATGTTGATGCTTGAAATGATTGGTGGAAGAAAGAACTATGACACCGGAGGTTCATGTTCTTCTGAAGTGTACTTTCCAGACTGGATTTATAAGGATCTCGAGCAAGGAAATACTCTTTTAAATTGTTTGACAATCTCGGAGGAAGAAAATGATATGGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACAAATCCATCAGATAGACCACCGATGAATAAAGTAATAGATATGCTACTAGGACCACTTTCATCAGTGTCATATCCTCCAAAGCCCCCTGTCTTATCTTCTCCTGAAAGGCCACCGCTACAAGTTTCAAATATGTCTTCGTCTGATTTGTATGAGACAAATTCAATTACA 1983 0.3596 STARMKPLFQRSFLFYFYAIAILILSIFDILACIREDDNQYTNCKKAFKCGNNISNRRIHYPFWGKNREQYCGVSNDPNMELTCEGNVSKITINSIKYRILKWYNTAQKLTVARDDYWSGICAVNVCDNHKNSTFDDNSLFQRDGDVSSQLNLLYNCDTNQSSSMIFSTTCNNIKVVYTLADPGSVTCTPTVIVEVPIMGNKVAGNATVNSINQALQGGFDLKWTGNYEECKGCVASGGTCGNNGGSEFRCFCKDGPYTTTCLSEKAPSSGKCAAAAGFGVIVFIIIMISCRLKRGTGRQQSCLIPLNIFRERRKLVDNNVEVFMRSYNLSMPRRYSYTEVKRITNSFQDKLGQGGYGVVYKASLSDGRQVAVKVINESKGNGEEFINEVASISRTSHMNIVSLLGYSYEVNKRALIYEFMSKGSLDKFIYKSEFPNAICDFDWNTLFQIAIGIARGLEYLHNGCSSRILHLDIKPQNILLDEDFCPKISDFGLAKICQRKDSIVSILGTRGTIGYMAPEVFNRAFGGVSYKSDVYSYGMLMLEMIGGRKNYDTGGSCSSEVYFPDWIYKDLEQGNTLLNCLTISEEENDMVRKITLVSLWCIQTNPSDRPPMNKVIDMLLGPLSSVSYPPKPPVLSSPERPPLQVSNMSSSDLYETNSIT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01841 661 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Tsu04g01841 661 Gene3D Transferase(Phosphotransferase) domain 1 421 627 - -
Tsu04g01841 661 SUPERFAMILY Protein kinase-like (PK-like) 321 620 IPR011009 -
Tsu04g01841 661 Pfam Wall-associated receptor kinase C-terminal 183 256 IPR032872 -
Tsu04g01841 661 Pfam Wall-associated receptor kinase galacturonan-binding 44 113 IPR025287 GO:0030247
Tsu04g01841 661 SMART serkin_6 346 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01841 661 MobiDBLite consensus disorder prediction 631 661 - -
Tsu04g01841 661 PANTHER RUST RESISTANCE KINASE LR10-RELATED 29 661 IPR045874 GO:0004672
Tsu04g01841 661 Gene3D Phosphorylase Kinase; domain 1 319 420 - -
Tsu04g01841 661 PANTHER TYROSINE KINASE FAMILY PROTEIN 29 661 - -
Tsu04g01841 661 Pfam Protein kinase domain 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01841 661 ProSiteProfiles Protein kinase domain profile. 346 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01841 661 MobiDBLite consensus disorder prediction 641 661 - -
Tsu04g01841 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01841 Tsu-Chr4 19728123 19753681 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01841 8 660 Receptor kinase-like Gene Family AT5G38260 39.531 7.60e-151 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu04g01841 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01841 - - cam:101489912 869.766