Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01840 ATGATTTCAATCATCAATATTCCGACGTGTCTATGTGAGGATGATAAACAATACACCAATTGCAACACCGCTTTTACCTGTGAAGGAAGCAGTATCTCAAACAGCCTCAAGTATCCGTTCTGGGGAGCAAACAGAGAAAAGTATTGCGGTGGTTCTGCTGATTCTAAGCCAGAGCTCACATGCGATGAAAGTGTTCCAAAGATAACAATCAATAGCGTCAAATACCGCATTCTTGATTGGGTCAATACAACACAAAAAATCACAGTTGCTAGGGATGATTACTGGGGTGGTATTTGTGCTGAGAGTGTGAGTGACAATAATAAAATCAACAGCACATTCGATGATAACTCGCTGTTTCAACGTGATGGTGATGTTTCTTCtcaattaatattgttatacAATTGCGTTACAAATCAATCGAGTGGTATTTATAGTATTACCTGCAATAATATTAATGTTGTGTACACCCTTTCGGACTCTGGTTCGGTCCAATGTACTCCAACTGTTATTGTTGAGTTTCCAATTATGGGAATCCAAGGTGCAGGAATTGCAACTGTGAATGCTATAAACCAAACATTACAAGGCGGTTTCGATCTGAAATGGAATGGAAATTATGGAGACTGTCCGGGGTGTGTTGATTCTGGTGGAGCCTGTGGCAATGATGGAGGAAGTGAATTCAGATGTTTCTGCAAAGATGGAGCTCATATAACTGATTGCCATTCAAAAAAGGCCTCATCCTCaagtaaaaGTTCAAACTTGGGACTTGTGATAGGCTTTAGTTATGAGGTAAACAAAAGAGCACTAATATATGAATTCATGTCCAAAGGATCATTGGATAAGTTCATCTACAAAAGAGAGTTTCCTAATGCtatttgtgattttgattggAACACTTTGTTCCAAATTGCAATTGGCATTGCTAGAGGTCTAGAGTACTTGCATCATGGATGTAGTTCAAGGATTTTGCATCTTGATATAAAGCCTCAAAACATTCTTTTAGATGAagatttttgtccaaaaatcTCTGATTTTGGACTAGCtaaaatatgccaaagaaaggaTAGTATTGTTTCAATACTAGGGACAAGAGGAACTATAGGATATATGGCACCAGAAGTATTTAGCAGAGCATTTGGTGGAGTTTCATATAAATCTGATGTATATAGTTATGGTATGTTGATGCTTGAAATGATTGGAGGAAGAAAAAACTATGACACCGGAGGTTCATGTTCTTTTGAAGTGTACTTCCCAGACTGGATTTATAAAGATCTAGAGCAAGGAAATACTCTTTTGAATTGTTTGACAAACTCAGAGGAAGAAAATGATATTGTTAGAAAGATTACTTTGGTGAGTCTATGGTGCATTCAAACGAATCCGTCAGATAGACCACCGATGAATAAAGTAATAGAAATGCTACTAGGACCAATTTCATCAGTGTCATATCCTCCAAAACCTATCTTATTTTCTCCTGAAAGGCCACCACTACCAGTGTCAGATGTGTCTTCATCCGATTTTTATGAGACAAATTCAATTACAGTGTCAAAATAA 1548 0.3598 MISIINIPTCLCEDDKQYTNCNTAFTCEGSSISNSLKYPFWGANREKYCGGSADSKPELTCDESVPKITINSVKYRILDWVNTTQKITVARDDYWGGICAESVSDNNKINSTFDDNSLFQRDGDVSSQLILLYNCVTNQSSGIYSITCNNINVVYTLSDSGSVQCTPTVIVEFPIMGIQGAGIATVNAINQTLQGGFDLKWNGNYGDCPGCVDSGGACGNDGGSEFRCFCKDGAHITDCHSKKASSSSKSSNLGLVIGFSYEVNKRALIYEFMSKGSLDKFIYKREFPNAICDFDWNTLFQIAIGIARGLEYLHHGCSSRILHLDIKPQNILLDEDFCPKISDFGLAKICQRKDSIVSILGTRGTIGYMAPEVFSRAFGGVSYKSDVYSYGMLMLEMIGGRKNYDTGGSCSFEVYFPDWIYKDLEQGNTLLNCLTNSEEENDIVRKITLVSLWCIQTNPSDRPPMNKVIEMLLGPISSVSYPPKPILFSPERPPLPVSDVSSSDFYETNSITVSK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01840 515 ProSiteProfiles Protein kinase domain profile. 133 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01840 515 SUPERFAMILY Protein kinase-like (PK-like) 250 472 IPR011009 -
Tsu04g01840 515 PANTHER TYROSINE KINASE FAMILY PROTEIN 252 512 - -
Tsu04g01840 515 SMART serkin_6 202 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01840 515 Gene3D Transferase(Phosphotransferase) domain 1 239 477 - -
Tsu04g01840 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672|GO:0006468
Tsu04g01840 515 Pfam Wall-associated receptor kinase C-terminal 162 233 IPR032872 -
Tsu04g01840 515 PANTHER TYROSINE KINASE FAMILY PROTEIN 2 252 - -
Tsu04g01840 515 Pfam Protein tyrosine and serine/threonine kinase 249 472 IPR001245 GO:0004672|GO:0006468
Tsu04g01840 515 PANTHER RUST RESISTANCE KINASE LR10-RELATED 252 512 IPR045874 GO:0004672
Tsu04g01840 515 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 252 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01840 Tsu-Chr4 19722400 19724777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01840 243 492 Receptor kinase-like Gene Family AT5G38280 55.294 8.80e-93 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu04g01840 PK_Tyr_Ser-Thr 2.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01840 - - mtr:MTR_7g082400 451.825