Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01838 ATGAAACCTCTACTTCATCATCCATCTTCTTCTAttattctttcctttttctgcTTCACACTTTTGATGATTTCAATCATTGATATTCCAACGTGTATGTGCGATGATGGTGACAAATACACGAACTGCAACACTGCTTTTACCTGCGAAGGAAGCAGCATCGCAAACAGCCTCAAGTATCCGTTCTGGGGAGTAAACAGAGAAAAGTATTGTGGTGGTTCTGCAGATTCTAAGACAAAGCTCACATGCGAAGATAAAGTCCTAAAGATAACAATCAATAGCGTCACATACCGTATTCTTGAATGGGACGATAGTATAGCACAGAAACTCACAGTTGCCAGAGACGATTActggaatgatatttgtactACCAGTGACAATCATAAGAACAGCACATTCGATAATACTCTGTTTCAACGTGATGTTGGCGGTTCTGGTTCTGCTAACCTAACTCTGTTATACGATTGTAATACAAAGCTACCGAATATGTTTTATAGTGCTACCtgcaataataatattaaagttGTGTACACCCTTGGGGATGCTGCTTCGATCACATGTGTTCCAACTCTCATTGTTGGGTTTCCAATTACGGGAGTTCAAGTTGCACAACTACTAACTCAAAATGATGTAAACCAAGCATTAGAAGGTGGTTTTGATTTGAAGTGGAATGGAAATTATACACAGTGTCAGGTGTGCATTGCTTCCCATGGAGCGTGTGGGAATGATAAAGGAAAATTCAGATGTTTCTGCGATGATGGAGCTCATACAACTTCATGTTATTCACAAATGGCCCCATCAAGTAAAAGCTCTAACACTGGCATTATAATAGGCGTAGTTGCAGGAGTTGCAGTCCTTGTTTGCATTCTTGGTGCGTGCTTTGTGGTTCGGCGAAGGAAGAAAAGAGCTGAGAAATCAAGAAGCATTGACGTCTTCATGCCTCCTCCAAGCAGCGGCACTGGCACTGGCACTCTAACCTCTACTACTAATTCCTCTCAGAGTAATTCTTCTTATCCATCTTCCAAATCTGGAAGAGTGCCCCAAAAGAGTTTCTACTTTGGTGTCCAGGTATTTACCTATGAAGAACTAGAAGAAGCTACCGACAATTTCCACACTTCTAAAGAAATTGGAGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGACGGGCGCGTGGTTGCGGTGAAACGCCATTACGAAAGCAACTTTAAACGCGTAGAGCAATTCATGAATGAAGTTGAGATTCTAGCACACTTAAGGCATAAGAACTTGGTGACACTCTTTGGATGTACCTCTAGATCTAGCAGAGAGCTTCTCCTTGTTTATGAATACATACCGAATGGAACAGTGGCTGATCATCTTCACGGGAAACGGTCGAGCTCGGCTATGGTTACTTGGCCTGTAAGATTGAACATTGCACTAGAAACAGCTGAGGCATTGGCCTACCTCCATAAAAAAGATGTCATACACCGGGATGTGAAATCCAACAACATTCTCCTAGACGAAAAATTTCATGTTAAGGTTGCTGATTTTGGTCTCTCAAGGCTGTTTCCGACCGATGTCACACATGTATCAACTGCTCCACAAGGAACACCTGGTTATGTTGATCCTGAGTATTATCAGTGTTACCAACTCACTGACAAGAGTGATGTTTATAGCTTCGGCGTACTCTTAGTCGAGCTTATATCATCTTTACAAGCTGTGGATATTACCAGGCATCGCAACGATGTGAACTTAGCCAACATGGCTGTCAATAAAATTCAGGGCCAAGAATTGCATGAGTTGGTTGATCCTGAACTTGGATATGAAAAAGACAATTCTGTGAGAAGGATGACAACAGCAGTGGCTGAATTAGCATTTAGGTGTTTGCAGCAACAAAAAGACTTGAGACCTTCAATGGACGAGGTGCTGGAGATTTTGAAAGCAATCAAGAGTGATGAACTTGAAACACATGAATCAAAATTATTAGATGTTGTTGTTAGAACAGATGAACTTGTACTTCTGAAGAAAGGTCCTTATCCAACTTCACCAGATTCTGTTGCTGACAAATGGGTTAGCGGCTCTTCTACATCTACTACTACTACCTCGTACTCATAG 2103 0.407 MKPLLHHPSSSIILSFFCFTLLMISIIDIPTCMCDDGDKYTNCNTAFTCEGSSIANSLKYPFWGVNREKYCGGSADSKTKLTCEDKVLKITINSVTYRILEWDDSIAQKLTVARDDYWNDICTTSDNHKNSTFDNTLFQRDVGGSGSANLTLLYDCNTKLPNMFYSATCNNNIKVVYTLGDAASITCVPTLIVGFPITGVQVAQLLTQNDVNQALEGGFDLKWNGNYTQCQVCIASHGACGNDKGKFRCFCDDGAHTTSCYSQMAPSSKSSNTGIIIGVVAGVAVLVCILGACFVVRRRKKRAEKSRSIDVFMPPPSSGTGTGTLTSTTNSSQSNSSYPSSKSGRVPQKSFYFGVQVFTYEELEEATDNFHTSKEIGEGGFGTVYKGELKDGRVVAVKRHYESNFKRVEQFMNEVEILAHLRHKNLVTLFGCTSRSSRELLLVYEYIPNGTVADHLHGKRSSSAMVTWPVRLNIALETAEALAYLHKKDVIHRDVKSNNILLDEKFHVKVADFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVLLVELISSLQAVDITRHRNDVNLANMAVNKIQGQELHELVDPELGYEKDNSVRRMTTAVAELAFRCLQQQKDLRPSMDEVLEILKAIKSDELETHESKLLDVVVRTDELVLLKKGPYPTSPDSVADKWVSGSSTSTTTTSYS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01838 700 MobiDBLite consensus disorder prediction 313 345 - -
Tsu04g01838 700 SMART serkin_6 370 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01838 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Tsu04g01838 700 Gene3D Phosphorylase Kinase; domain 1 345 446 - -
Tsu04g01838 700 Pfam Protein kinase domain 370 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01838 700 Gene3D Transferase(Phosphotransferase) domain 1 447 658 - -
Tsu04g01838 700 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 18 695 - -
Tsu04g01838 700 Pfam Wall-associated receptor kinase C-terminal 195 254 IPR032872 -
Tsu04g01838 700 SUPERFAMILY Protein kinase-like (PK-like) 350 648 IPR011009 -
Tsu04g01838 700 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 695 IPR044652 -
Tsu04g01838 700 MobiDBLite consensus disorder prediction 305 345 - -
Tsu04g01838 700 ProSiteProfiles Protein kinase domain profile. 370 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01838 700 MobiDBLite consensus disorder prediction 673 700 - -
Tsu04g01838 700 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Tsu04g01838 700 MobiDBLite consensus disorder prediction 683 700 - -
Tsu04g01838 700 CDD STKc_IRAK 376 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01838 Tsu-Chr4 19692479 19700918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01838 39 696 Receptor kinase-like Gene Family AT1G25390 42.348 2.21e-153 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu04g01838 Pkinase 6.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01838 - - cam:101490779 743.036