Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01831 ATGACTGTCGATTTAAGATTGGACGCGCTTTCGGGTTTCATCGCAATCCTTCTCCGACGCCGTTTGTGCATTGCATTACATATCAACACCAAGATGGAATCACAAATTAAGAAAGCTCTCGTTATCAAAGTTATGGGACGAACTGGATCTCGAGGACAAGTCACTCAGGTTAGAGTGCAGATTGTGGAGGATCAGAATCGTGTCATCACGAGGAATGTGAAAGGACCAGTTAGGGAAGGAGATTTTCTCACTCTACTTGAGTCCGAGAGAGAAGCAAGACGACTCCGATAG 291 0.4536 MTVDLRLDALSGFIAILLRRRLCIALHINTKMESQIKKALVIKVMGRTGSRGQVTQVRVQIVEDQNRVITRNVKGPVREGDFLTLLESEREARRLR 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01831 96 Pfam Ribosomal protein S28e 35 95 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu04g01831 96 SUPERFAMILY Nucleic acid-binding proteins 32 96 IPR012340 -
Tsu04g01831 96 CDD S1_S28E 37 96 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu04g01831 96 Gene3D - 28 96 IPR012340 -
Tsu04g01831 96 PANTHER 40S RIBOSOMAL PROTEIN S28 32 96 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu04g01831 96 PANTHER 40S RIBOSOMAL PROTEIN S28 32 96 - -
Tsu04g01831 96 Hamap 30S ribosomal protein S28e [rps28e]. 32 96 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu04g01831 96 ProSitePatterns Ribosomal protein S28e signature. 87 95 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01831 Tsu-Chr4 19591326 19592645 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01831 32 96 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 80.000 1.73e-30 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01831 K02979 - csin:114292156 86.2705