Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01829 ATGACACTAACCATGTGTGGTCTTGGCAATGACGTACGTGATGATTTAACTTTAGATGAGGAACAACAATTGCATGAGCTGAAGGATTTGTTACGAAGCTTCTCCATCCCCTCGGGTAGGCCTGATAGATGGCGGTGGTTGCCGGGTCCAATGGGTATGTTTACCGTTAATTCTTGTTATTTTTGGCTGCTTCATTCTACTGTTGATAGTGATGTGGAATGTAATGTGTtgaaggttatccaaaagctttGGAAGAATGACGTTCCgtcaaaaatcaatttatttggATGGAGGTTATTATTAGAGAAATTACCAACAAAGGCGGCTCTTAATCGAAGAGGACAAGACATTAGGCCATCTTTGGAAGGTTGGaatcattttttagaatttggCTCTATGGTAAAATCGAAAAAGGTTTTACATACCTCGCAGCCAAAATCTGAATTACTAGGATTTCCTTCCCTAGAAACCAGAAgCGTTTTTGTGTTTCATAGCAATCTTACCAAACACCGTTTTGCTCGCTGCATCTTTCCAACACCAAAGATGGAATCACAGATTAAGCATGCCCTTGTTGTGAAAGTTATGGGTCGGACTGGATCTCGAGGACAGGTGACTCAGGTTAGAGTGAAGTTTTTGGACGATCAGAATCGTCACATCATGAGGAATGTTAAAGGACCGGTTAGGGAGGGAGATGTTCTCACCCTACTTGAGTCTGAGAGAGAAGCAAGAAGACTCCGATAG 741 0.3954 MTLTMCGLGNDVRDDLTLDEEQQLHELKDLLRSFSIPSGRPDRWRWLPGPMGMFTVNSCYFWLLHSTVDSDVECNVLKVIQKLWKNDVPSKINLFGWRLLLEKLPTKAALNRRGQDIRPSLEGWNHFLEFGSMVKSKKVLHTSQPKSELLGFPSLETRSVFVFHSNLTKHRFARCIFPTPKMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDVLTLLESEREARRLR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01829 246 Hamap 30S ribosomal protein S28e [rps28e]. 182 246 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu04g01829 246 Pfam zinc-binding in reverse transcriptase 54 119 IPR026960 -
Tsu04g01829 246 SUPERFAMILY Nucleic acid-binding proteins 182 246 IPR012340 -
Tsu04g01829 246 Pfam Ribosomal protein S28e 185 245 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu04g01829 246 ProSitePatterns Ribosomal protein S28e signature. 237 245 IPR028626 -
Tsu04g01829 246 PANTHER 40S RIBOSOMAL PROTEIN S28 182 246 - -
Tsu04g01829 246 CDD S1_S28E 187 246 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu04g01829 246 PANTHER 40S RIBOSOMAL PROTEIN S28 182 246 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu04g01829 246 Gene3D - 180 246 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01829 Tsu-Chr4 19559978 19563967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01829 182 246 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 2.35e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01829 K02979 - gmx:100818200 103.219