Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01806 ATGGCAATACAAAGAAACGGTTCTGTGAGTTCGGTTGGCGAAGTCGGGGGAGAAATTGAAGAAGAACCTAATGAGGCAATCTATGTTGCTGTGTCAAAGGATGTAAAAGAGAgtaaattgaatttgatatgGGCAATACAGAACTCTGGAGGAAAGAAGATCTGTATCCTTTATGTTCATGTGCCTGCAACAATGATCCCTTTGATGGGTGCTAAATTTCCTGCAAGTTCATTGAAAGATCAAGAAGTCCAAGCTTTCCGGGAAATTGAAAGGCAAAACATGCATAAGACTATGGATGAATATCTTCGTATCTGTCAACGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGATAACATTGAAAAAGGAATTATAGAACTTATCTCCCAGCATGGTATCCGGAAGCTTATTATGGGAGCAGCATCTGATAGGAGAATGATGGACCTCAGATCTAAGAAAGCCATCTATGTATGCGAACAAGCTCCAGCTTCTTGCCATATACAGTTTATCTGCAAAGGCCACCTTATACACACAAGGGATCGTGGTTTAGATGAACGGAACGTAGAGATTGCATCTCCTTTGACCCCACAAGTGCCAAACTCTGTGAGATCTTTGAGATCTCAATCTATTACACTGGGGCAGAATCATAGGACAGATTCAAGTAGTTCTATTCAAGAGTTATTTCGCAGAGTGAGGTCTGCCAATGATGGACAGAGAGCGAGCATATCTTCTCCAAATGACACTGAAGGGTTTTCAACTCCATCTAACAGGCGAGGTACAGAAGTAAGTTCTGATGAGTCCGATAGGCTTTCAAGGACTAGTCCTTCAGGTTTGTCGACATTCTCTGATAGTGCAGTTGAACCAGCACTGACCCCAAATGTGGTTGCCGAGAGCAGTATGAATGCATTAGACTTGACTTTTAGTCGCCTGGATATAAAGGAGGATCTGCATCGTCTATCGCCTCCAAGTGTGCTGGATGGTGGAGTAAACGATACGCTCTATGACCAACTTGAACAGGCTATGTCTGAGGCTAATAATGCTACTCGACATGCATATCAAGAAACTTTCAGACGCGGGAAAGCTGAAAAAGAAGCCATTGAAGCTATACGCCGGGCTAAAGCTTCCGAAAGCTTATATACAGAGGAGTTGAATCAAAGGAAAATGGTGGAGGAAGAActaaaaaaggaaatagaaGAACTTGAGAGTGTGATGAGGCAGAGAGACAAAGTTAATGAAGAACTCCAACTTGCCCTGGATCTGAAGTCATCACTAGAGAGTCAACTTGCATCTTCTGAAGTTATGATACAGGAGTTGGAACAGAAGATTATATCGGCTGTGGAACTGTTACAAAGCTACAAGAATGAACGAGATGAGTTGCAGATGCAACGCGATAATGCATTGAGAGAGGCTGAAGATCTCAGGAAAAAACAAGGCGAGGGATCGAGCTCCCATGTTGCTCAATTGTTCTCAGAATTCTCTTTTTCAGAAATTGAAGATGCAACAGGTAACTTTAATCCATCTCTAAAGATCGGAGAAGGTGGATATGGAAATATATTTAAAGGTCTCCTCCGTCACACCGAAGTCGCTATAAAAGTGTTGCACGCCAACAGTATGCAAGGACCCTTGGAATTTCAGCAGGAGGTGGATGTATTGAGTAAGCTAAGGCATCCCAATCTCATCACTCTTATAGGAGCCTGTCCAGAATCTTGGTCTCTTGTCTATGAGTATTTACCAAATGGAAGTCTTGAAGACCGTCTTGCCTGCAAGGATAACACACCTCCATTATCATGGCAAACGCGGATTCGTATTGCTGCAGAACTCTGCTCCGCTCTCATCTTTCTTCATTCGAGTAAACCTCACAGCATAGTACATGGTGACTTGAAACCCTCCAATATCATCCTAGATGCAAACCTTGTCAGTAAGCTTAGTGACTTTGGAATCTGTCGCATATTATCAAATTATGAGAATTCTAGTAATAATAACACACAGTTTTGGAAAACCGATCCCAAAGGGACTTTTGTCTATATGGATCCGGAATTCCTTGCTTCCGGTGAACTCACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACCGGGAGACCAGCTTTGGGAATAACCAAGGAAGTGAAATATGCTGTAGATACCGGAAAGTTGACATCTTTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAACAGTTGGCTCGCTTGGCTTTGCGGTGTTGTGAGATGAATAGGAAGAGTCGGCCGGACCTTCATTCAGATGTCTGGAGGATATTGGATGCAATGAGGGCTTCCTCTGGAGGCACAAACTCCTTTGGTCTAAGTTCTGAAGGGCCTCACCAACCTCCTTCATATTTTATCTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTACGAAGCGGAGGCTATCCGAGGATGGCTCGACAGTGGTCATGACACTTCACCGATGACAAACAGTACACTTTCACATCAGAATCTTGTCCCCAACCGCGGTCTTCGCTCCGCGATCCAGGATTGGCTTCAAAGCCATTGA 2595 0.4316 MAIQRNGSVSSVGEVGGEIEEEPNEAIYVAVSKDVKESKLNLIWAIQNSGGKKICILYVHVPATMIPLMGAKFPASSLKDQEVQAFREIERQNMHKTMDEYLRICQRMGVRAEKLHIEMDNIEKGIIELISQHGIRKLIMGAASDRRMMDLRSKKAIYVCEQAPASCHIQFICKGHLIHTRDRGLDERNVEIASPLTPQVPNSVRSLRSQSITLGQNHRTDSSSSIQELFRRVRSANDGQRASISSPNDTEGFSTPSNRRGTEVSSDESDRLSRTSPSGLSTFSDSAVEPALTPNVVAESSMNALDLTFSRLDIKEDLHRLSPPSVLDGGVNDTLYDQLEQAMSEANNATRHAYQETFRRGKAEKEAIEAIRRAKASESLYTEELNQRKMVEEELKKEIEELESVMRQRDKVNEELQLALDLKSSLESQLASSEVMIQELEQKIISAVELLQSYKNERDELQMQRDNALREAEDLRKKQGEGSSSHVAQLFSEFSFSEIEDATGNFNPSLKIGEGGYGNIFKGLLRHTEVAIKVLHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLVSKLSDFGICRILSNYENSSNNNTQFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAVDTGKLTSLLDPLAGDWPFVQAEQLARLALRCCEMNRKSRPDLHSDVWRILDAMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLSHQNLVPNRGLRSAIQDWLQSH 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01806 864 ProSiteProfiles Protein kinase domain profile. 506 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01806 864 Pfam U-box domain 795 864 IPR003613 GO:0004842|GO:0016567
Tsu04g01806 864 Coils Coil 381 478 - -
Tsu04g01806 864 MobiDBLite consensus disorder prediction 238 262 - -
Tsu04g01806 864 SMART Ubox_2 797 860 IPR003613 GO:0004842|GO:0016567
Tsu04g01806 864 PANTHER U-BOX KINASE FAMILY PROTEIN 11 863 - -
Tsu04g01806 864 Pfam Protein kinase domain 510 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01806 864 PANTHER OS02G0152300 PROTEIN 11 863 - -
Tsu04g01806 864 SUPERFAMILY RING/U-box 788 863 - -
Tsu04g01806 864 Gene3D Transferase(Phosphotransferase) domain 1 579 783 - -
Tsu04g01806 864 CDD RING-Ubox_WDSUB1_like 798 839 - -
Tsu04g01806 864 MobiDBLite consensus disorder prediction 271 287 - -
Tsu04g01806 864 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 43 151 - -
Tsu04g01806 864 Gene3D HUPs 26 168 IPR014729 -
Tsu04g01806 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Tsu04g01806 864 MobiDBLite consensus disorder prediction 236 287 - -
Tsu04g01806 864 ProSiteProfiles U-box domain profile. 793 864 IPR003613 GO:0004842|GO:0016567
Tsu04g01806 864 CDD STK_N 27 175 - -
Tsu04g01806 864 Coils Coil 332 356 - -
Tsu04g01806 864 Gene3D Phosphorylase Kinase; domain 1 476 578 - -
Tsu04g01806 864 ProSitePatterns Protein kinases ATP-binding region signature. 512 533 IPR017441 GO:0005524
Tsu04g01806 864 SMART serkin_6 506 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01806 864 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 792 864 IPR013083 -
Tsu04g01806 864 SUPERFAMILY Protein kinase-like (PK-like) 482 764 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01806 Tsu-Chr4 19378248 19383606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01806 24 864 U-box Gene Family AT2G45910 55.148 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Tsu04g01806 Pkinase 3.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01806 - - gmx:100807515 1351.27