Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01786 ATGTTGGGTAATGAGCAACCTTTGGATTTGTATAAGCTCTTCATGGTGGTGAAGGATAAAGGTGGTTATGATGTTGTTTGTAAGAACAGGCTGTGGGATTTGGTTGGGGAAGAATATGGGTTGGGTGTGAAGGTTGGTTCATCTGTTGAACTTGTTTATAGTAAGTATTTGAGTACTTTAGAGACACCTTTGAAGAATGTTGTTGATGGTGAGTTCCCTAAGTGTGATTTAGTGGATGATAGAGTTAAATTTGGCGAGCGTTTAATGGAGCTGCAAGCTGAATTCTTGCTGGATGATTATGGTGAGGAAGATGCGGGGGATAGTGTATATGAATGTAGGAGGAAGTTGTGTAATAGAGTGAAGGGCGTGAAGGGTGTGAATCAAGAGTTGAATGCGGCCGAACTCGAAAGGGTATATGACTACATAGATGGGAAGAAGTTGTGTGGTACTAATAGAGTGAAGGATGTGAATCTTGAGTCTAATGCAGCCAAGAAAGTTCAGAATGGAGTTGTTGACGTGTGTATGCAGGATTGTAAGAAGAATGAGACTAGTCTCAGAAAGTTGGTTAACCATAATGTTGCAATGGAAATAATGGATGATGTATCCGATGCAGCAAACAGCATGCCCGGATTGTCCGATGGAAGCAAGAGTTGTGCTAATGATGATGCTAATGACAGTGGTGATGATCTCTTAGTGTTGGAACCGTCTAGTGTTAATAGAGAGAGCTTCGGTCGTAAGAGGAAGAGAGACTCGATGACAGAAACGCTAAGTTGGGTTACTAGCATTGCAAAGAATCCTTGTGATCCGGTGATAGGTTCAATGCCTGAAAAGCCGAAGTGGAAGTCTTATGGTAATCAAGAGACCTGGAAGAAGGTTTTGTTGTTTCGAGAAGCTGCCTTTTTGAAAAGAGATTTTGCATCAAACTGTGAAAAACTCAGTTGGCTGGCTCAGAGGATGCATCCTTGTATGTATGATGATAACCTTGGGACAAATTACAATCTTAGACAAAGGATCAAATGTGACAATGGACTTTTAGCTGGAAAATCTTCATCTGCTTTGCAAAGAACACCAAGTTCTTTTACTGAAAATAGTGCCAAGAAAAAGTTACTTGACTCCGGTGATTCACAATCAAGTCTTGATACACCTCCCACCGTGAACATCCCTCTCGGGCCAAACCATCAAGCTGAATTGCCTGAATGGAGTGGCACAACTCACGAGAGTGATTCTAAGTGGTTAGGAACCCAAATATGGCCACTGAAAACTGTAAAATCCAAATTTTTGGAATGGGAGCATGTAGGACAGGGTAGAGAAGACTCATGTAGTTGTCGAGTGCAAGGTTCGGTCGAGTGTGTTCGACATCATATTACTGAGAAAAGGTCTAAACTCAAGCTGGAGTTAGGTGTTGCCTTCTACCAATGGAGTTTAGACAAGGTAGGTGAAGCAGTAGGGCGATGGTGGACGCAGCAAGAAGAGAAGAAGTTCAAAGATGCAGCAAAATCAAACCCTGCTTCGATTGATAGATGTTTCTGGgataatattttcaaaacatttCCTAAGAAGAGCAGGGAAAATTTAGTCAGCTACTACTTCAATGTGTTTCTTTTGCAGCGCAGAGCATACCAGAACAGGCACACTCCAGATAACGTTGACAgcgatgatgaagaatcagaattTACATCATTGAGGGGTATTTTTGGACATCAAAGTAATAAATCAAACAGCATCACCATATTATCTCCTAAGAAGCCACAGACAAAGCCACATACAAAAGGAAGATAG 1779 0.4087 MLGNEQPLDLYKLFMVVKDKGGYDVVCKNRLWDLVGEEYGLGVKVGSSVELVYSKYLSTLETPLKNVVDGEFPKCDLVDDRVKFGERLMELQAEFLLDDYGEEDAGDSVYECRRKLCNRVKGVKGVNQELNAAELERVYDYIDGKKLCGTNRVKDVNLESNAAKKVQNGVVDVCMQDCKKNETSLRKLVNHNVAMEIMDDVSDAANSMPGLSDGSKSCANDDANDSGDDLLVLEPSSVNRESFGRKRKRDSMTETLSWVTSIAKNPCDPVIGSMPEKPKWKSYGNQETWKKVLLFREAAFLKRDFASNCEKLSWLAQRMHPCMYDDNLGTNYNLRQRIKCDNGLLAGKSSSALQRTPSSFTENSAKKKLLDSGDSQSSLDTPPTVNIPLGPNHQAELPEWSGTTHESDSKWLGTQIWPLKTVKSKFLEWEHVGQGREDSCSCRVQGSVECVRHHITEKRSKLKLELGVAFYQWSLDKVGEAVGRWWTQQEEKKFKDAAKSNPASIDRCFWDNIFKTFPKKSRENLVSYYFNVFLLQRRAYQNRHTPDNVDSDDEESEFTSLRGIFGHQSNKSNSITILSPKKPQTKPHTKGR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01786 592 Gene3D - 1 70 IPR036431 GO:0003677
Tsu04g01786 592 MobiDBLite consensus disorder prediction 351 388 - -
Tsu04g01786 592 CDD ARID 6 61 - -
Tsu04g01786 592 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 586 - -
Tsu04g01786 592 MobiDBLite consensus disorder prediction 566 583 - -
Tsu04g01786 592 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Tsu04g01786 592 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Tsu04g01786 592 SMART bright_3 2 66 IPR001606 GO:0003677
Tsu04g01786 592 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 586 - -
Tsu04g01786 592 MobiDBLite consensus disorder prediction 566 592 - -
Tsu04g01786 592 SUPERFAMILY ARID-like 5 67 IPR036431 GO:0003677
Tsu04g01786 592 CDD SANT 486 533 IPR001005 -
Tsu04g01786 592 MobiDBLite consensus disorder prediction 351 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01786 Tsu-Chr4 19198631 19205194 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu04g01786 ARID 2.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01786 - - mtr:MTR_7g078120 951.814