Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01784 ATGGGAGGTTGCTGTTGTTCCGCCAGAAAACATCATTTGCAAGGAACACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCGCGAGTCTTTAACCTCTAATGACGGTACTGCTGCTTCGCTCGCTTCTGGATATCTGGTTGGGTTGAACCTAGAAGCGTCCATACCCGATACATTCCGCTCTCCTCCTGTGCCTCTTCCTTACGACATTGTCTTTGGAGGTTCTGCGTCAACTGATTCTGAGTCTGGCAGAGAAACAGTTAGTGTTAGTAGTTTTGAAACTTCAATTACACGTGATGATATAGAAGAATCGGATTGTAAAGCTCAAACAAAATCTGCACCTATATCTCCAAGGAAGGTAGAACTATCAAAATCAAATGGAACTCAAGTATTGGTAACAGAAGAAGAGGATGTCTGCCCAATTTGTCTTGAAGAATATGATGACGAGAATCCTAAAAATCTGACAAAATGTGAACATCATTTTCATCTATCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGACCAGGAGATGATATTTTGA 561 0.4135 MGGCCCSARKHHLQGTPVYYYCPPTFEERESLTSNDGTAASLASGYLVGLNLEASIPDTFRSPPVPLPYDIVFGGSASTDSESGRETVSVSSFETSITRDDIEESDCKAQTKSAPISPRKVELSKSNGTQVLVTEEEDVCPICLEEYDDENPKNLTKCEHHFHLSCILEWMERSDSCPICDQEMIF 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01784 186 Pfam Ring finger domain 139 180 IPR001841 -
Tsu04g01784 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 185 IPR013083 -
Tsu04g01784 186 SUPERFAMILY RING/U-box 134 184 - -
Tsu04g01784 186 SMART ring_2 140 180 IPR001841 -
Tsu04g01784 186 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 186 - -
Tsu04g01784 186 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Tsu04g01784 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01784 Tsu-Chr4 19163412 19166291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01784 1 186 C3H Transcription Factor Family AT4G00335 57.527 5.78e-74 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01784 - - gmx:100812687 332.028