Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01780 atgggaTTCTCTGGAGATTACCCTGAAGTACAAATCCCTAACGTATTCATTTACATTCTCTCATTCATTGCCTTCTTTAGATCCATAGCTATGTTCTTCATTTCCATCTTTGACACCGCTTTCTCTTCACCGGACTCAAATCTCCACCGTCCCACTTTCTCTGCAATCCTCATCCGTGAATTCCTCCCTGTCGTAAGTTTCAGTGATCTCGACGGAGACTCGCCGCCGGCTGTGGAGTGTTCGTTGTGTTTAAACGATTTCGCCGGAGAAGAAGAGATCAGGTGTATGGCGAACTGTAGACATATATTTCACCGGACGTGTGTGGATCGTTGGATTGATCATGATCAGAAGACGTGTCCACTTTGTAGGACCCAGTTTGTACCTTATCATAAAATGGAAGACTATAATCAACGCGTATGTATTGCTTCTCAATCTCAAGATGATgatgttttacttttttctcAACGCTAG 471 0.4161 MGFSGDYPEVQIPNVFIYILSFIAFFRSIAMFFISIFDTAFSSPDSNLHRPTFSAILIREFLPVVSFSDLDGDSPPAVECSLCLNDFAGEEEIRCMANCRHIFHRTCVDRWIDHDQKTCPLCRTQFVPYHKMEDYNQRVCIASQSQDDDVLLFSQR 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01780 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 128 IPR013083 -
Tsu04g01780 156 Pfam Ring finger domain 79 123 IPR001841 -
Tsu04g01780 156 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 154 - -
Tsu04g01780 156 SUPERFAMILY RING/U-box 79 134 - -
Tsu04g01780 156 SMART ring_2 80 122 IPR001841 -
Tsu04g01780 156 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 154 - -
Tsu04g01780 156 ProSiteProfiles Zinc finger RING-type profile. 80 123 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01780 Tsu-Chr4 19100638 19101194 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01780 1 151 C3H Transcription Factor Family AT1G63840 40.491 7.86e-39 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01780 K16281 - gmx:100813224 174.096