Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01778 ATGGGCTTCCCTGTAGGGTACCCTGAAGTATCCGTCCCCAACCTCTTCCTCTACACTCTCTCTCTCCTTGCCTTTCTAAGATCCATAGTTATCACCTTCCTTTCCCTCCTCCATCTCTCCGACATCCTCGACACCAATTTCTCCGCCGTCTCTTCACCGGACTCACATCTCCACCGTCCCACTCTCTCTGCAATCCTCATCCGTGAATTCCTCCCTGTAGTCAATTTCAGTGTCATCGCCGGAGACTCGCCGCCGGCAGTGGGGTGTGCGGTGTGTTTAAACGAATTCACCGGAGAAGAAGCGATTAGGTGTATGGCGAACTGTAGACATATTTTTCATCGGACGTGTGTGGACTGTTGGATCGATCATGATCAGAAGACGTGTCCACTTTGTAGAACCCACTTCGTACCTTATCATAAAATGGAAGATTATAATCAACGGTTGTGGGCTGCTTCTGcatctgatgatgatgattatgatgtttCTCTTTATTCTCTACATGATGACCACATTGCTACTTCTtcattctga 531 0.4557 MGFPVGYPEVSVPNLFLYTLSLLAFLRSIVITFLSLLHLSDILDTNFSAVSSPDSHLHRPTLSAILIREFLPVVNFSVIAGDSPPAVGCAVCLNEFTGEEAIRCMANCRHIFHRTCVDCWIDHDQKTCPLCRTHFVPYHKMEDYNQRLWAASASDDDDYDVSLYSLHDDHIATSSF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01778 176 Pfam Ring finger domain 89 132 IPR001841 -
Tsu04g01778 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 137 IPR013083 -
Tsu04g01778 176 ProSiteProfiles Zinc finger RING-type profile. 89 132 IPR001841 -
Tsu04g01778 176 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 171 - -
Tsu04g01778 176 SMART ring_2 89 131 IPR001841 -
Tsu04g01778 176 SUPERFAMILY RING/U-box 88 145 - -
Tsu04g01778 176 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01778 Tsu-Chr4 19050558 19051088 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01778 1 154 C3H Transcription Factor Family AT1G63840 45.860 8.39e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01778 K16281 - gmx:100813224 203.756