Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01774 ATGGAagcctcttcttcttctccttgcAGTTCAAGTTCAGCCTCAAGGTTATGTAGCTACcatgtgtttttgagttttagAGGAGAAGATACACGCAAAGGATTCACTGATCATTTGTGTGCTTCCCTTGAGAGAAAAGGGATCACAACTTTCAGAGATGACAAAGACCTTGAGAGAGGACATCTCATTTCACAAAAGCTAATCAATGCAATTCAAGATTCTATGTTTGCTATTACTATTCTCTCATCAGACTATGCTTCTTCCAGTTGGTGTTTGGATGAGCTTCAAATGATCATGGAGTGCAGCAGTAATAACAACCTGCAAGTTTTGCCAGTCTTTTATGGTGTGGATCCATCTGATGTAAGGCATCAAAGAGGTTGCTTTGAGGATGCTTTCAGAAAACATCAAGAGAAATATGGTAAAAACAGTGACAGGGTTGAAAGATGGAGAGATGCTTTGACACAAGTTGCCAGTTACTCTGGATGGGACTCCAAGGGCCAGCATGAGGCATCACTAGTGGAAAACATTGCTCAACACATACACAGAAAGTTGGTACCTAAATTTCCATCTTGCACAGAGAATCTTGTTGGGATTTCTTCAAAGGTAAAGCAAGTGAACAAGCTGATAGGTATGCAGTTGAACGATGTTCGCTTTATAGGCATATGGGGTATGGGTGGTATAGGTAAGTCAACTATTGCTAGAGCTGTCTATGAAGCAATCCAAGGTGAATTTCAACATGCTTGTTTTCTTGCAAATGTTAGAGAGTTATCTGAGAAAAATGATTTAGTTCACACACAAAGACAACTTCTTTCTCATGTGAATATAAGTAGGAATGATTTTCATAATTTGTATGATGGGAAAAACACAATACAGAATTCTTTATGCAGAAAAAAGGTTCTCCTTGTTCTTGATGATGTGAATGAATTAAACCAGTTGGAGAATTTGGCTGGGAAACAAGATTGGTTTGGTCCTGGAAGTCGAGTACTAATCACAACTAGAGATAAACATTTGCTAATGACACATGGAGTACACAAAACTTATCAAGTAGGAACGTTATTCCCAAATGAAGCCCTTAACCTCTTTTGTTTAAATGCCTTTAAAGGAGATCAACCACAAGAAGGGTATTTGGATTTGTCCAAAGAAGTGGTTGACTATACTGGTGGTCTTCCATTGGCACTTGAGGTGTTAGGTTCCTATCTCTATAGAAGAAATGTTGATATTTGGCATAgtgctattaaaaaaataaaaagtgttcCACACCCTAGAATCCAAGATAAACTGAAACTAAGCTATGAGAGTTTAGATACCATGGAGAAGGATATTTTTCTAGATATTGCCTGTTTCTTCAAGGGAATGAAGGGAGATCAAGTAATAGATATATTAGAGAGTTTTGGTTATTGCCCTCAAATTggaattgaaattttgattgaaaGATCTTTGATAACTCTAGattctatgaataataaactggGAATGCATGATTTGCTTCAAGAAATGGGCAGGGATATTGTATTTCAGGAATCTCCAAATGATCCTAGCAGACGTAGCAGGTTGTGGTCTCAAGAGGACATTGATCACGTCTTGACAAAAAACAAGGGAACTGAAGCAATTAAGTGTATAGATATGAAATTACTTAGACCATATGAAGCACGTTGGAACAACAAAGCATTCTCAAAGACAAGTCAGCTAAAATTTCTCAGTTTATGTGAGATGCAACTTCCCCTTGGCCTCAGTTGCCTTCCTTGTTCATTAAAAGTTCTTCACTGGAGAGGATGTCCTTTGAAAACTCTGCCACTAACAACTCAACTGGATGAAGTTGTTGACATTAAATTATCTCATAGCAAAGTTCAACAACTTTGGCAAGGAATAAAGTTTATGGAAAAGCTGAAGTACTTGAATATGGCTTTTTCAAAGAACCTGAAGAGAATGCCTGATCTTTCTGGGGTTCCAAatcttgaaaaattgattcttaaaGGCTGTGAAGGCCTAACTGAGGTTCATCCATCGCTTGTACACCACAAGAAAGTTGCTTTGATGAATTTAGAAGACTGCAAAAATCTTAAATCTCTTCCTGGGAAGTTGGAGATGAGTTCCCTGAAGAAGCTAATTCTTTCTGGCTGCTGTGAATTTGAATTCCTTCCAGAGTTTGGAGGAAAAATGGAAAATCTCTCAGTACTTGCTTTAGAAGGAACAGCTATAAAAAAACTGCCCTCATCACTTGGATGCCTAGTTGGACTTACTAATTTGAACTTAAAGGATTGCAAAACTCTTGTTTGTCTACCAGATACCATTCATGGATTGAATTCCCTCATAATTCTTGACATTTCTGGATGCTCAAAACTCTATAGATTGCCAGATGGTTTAAAGGAACTCAAGAGTTTGGAGGAACTCCATGCCAATGATACTTCCATTGATGAACTACCTTCCTCCATTATTTTTCTAGATAGTCTTAAAGTATTATCATTTGCTGGTTGTAAAAGGCCATTGACCAAGTCAATGAACTGGTTTCTTCCATTCAATTGGATGTTTAGGAGTCAACCAGATTCCACTGGATTCAGATTTCCAACTTCTGGCTGGAGCTTCCCTTCTTTGAAATGCTTAAACCTAAGTTACTGTAATCTTTCTGAAGAATCAATCCCGAATTATTTTCGCCACCTATCATCTTTGAAGTCTTTGGATCTAACTGGTAACAATTTTGTTATCATACCAAGCAGCATTTCTAAACTTTCAAGGCTGAGATTTCTTACTCTAAATTGGTGTCAAAAGCTTCAATTGTTGCCAGATCTTGCATCAAGTATGATACAGTTGGATGCAAGCAATTGTGGTTCACTGGAAACTACCAAATTTAATCCAGCAAAGCCATGTAGTCTCTTCACATCACCTAGACAACTGTCCTACTTTCAAAAACTTTGTCAGACAAGCGATGGGTTTTATCTTCCATGTGCAAGATTTGACATGTTTATCCCTGGTAAAGAAATTCCATCTTGGTTTGTACCTCAAAGAACTGTTTCCTGGGCAAAAATACATGTCCCGAATAATTGCCCTCTAGATGAATGGGTAGgattttctctttgttttctatTAGAAAGTTATGCTGACCCTCCTGAACTGTGCAAGCATGAGATTGAATGTTATTTGTTTTCACGTAATGGTAAGAAGTTAATCACTACCAGGAGGTTACCTCCTATGGATCCATGTTATCCTCACCTTTATATTCTCTACCTGTCCATTGATCAATTTCGCGACGAAATTCTCAAAGATGATTTCTGGAGTGACATTGAATTTGCATTGAAATGTTATTGCTGTAATTCATTGCAAGTAGTGAGGTGTGGTTGCCGTTTGGTATGTAAGCAAGATGTTGAAGATTGGAACAAATTGAAGAGTAAATTCAATGAGAATGCTAGAGCAATGAATGCTTTGGACAAATATCTTTACAAAATGAGTAAAGTAATGCAGGATGATAGTGTTAGTTCCATGCTGACCCCTGCAGATAAAATGAAGATCAATTCTGCAattataaaaggaaaaagtttgattgataatcatGGCAACCAGCACAGAGAAACATGTGTGTTTGTGGACTTTATGAAGGAGCTTGAAAGCATATTTGAATCCACTTTGAAGAAGATCAACAAAGATTACTTACTCTTGTAA 3654 0.3604 MEASSSSPCSSSSASRLCSYHVFLSFRGEDTRKGFTDHLCASLERKGITTFRDDKDLERGHLISQKLINAIQDSMFAITILSSDYASSSWCLDELQMIMECSSNNNLQVLPVFYGVDPSDVRHQRGCFEDAFRKHQEKYGKNSDRVERWRDALTQVASYSGWDSKGQHEASLVENIAQHIHRKLVPKFPSCTENLVGISSKVKQVNKLIGMQLNDVRFIGIWGMGGIGKSTIARAVYEAIQGEFQHACFLANVRELSEKNDLVHTQRQLLSHVNISRNDFHNLYDGKNTIQNSLCRKKVLLVLDDVNELNQLENLAGKQDWFGPGSRVLITTRDKHLLMTHGVHKTYQVGTLFPNEALNLFCLNAFKGDQPQEGYLDLSKEVVDYTGGLPLALEVLGSYLYRRNVDIWHSAIKKIKSVPHPRIQDKLKLSYESLDTMEKDIFLDIACFFKGMKGDQVIDILESFGYCPQIGIEILIERSLITLDSMNNKLGMHDLLQEMGRDIVFQESPNDPSRRSRLWSQEDIDHVLTKNKGTEAIKCIDMKLLRPYEARWNNKAFSKTSQLKFLSLCEMQLPLGLSCLPCSLKVLHWRGCPLKTLPLTTQLDEVVDIKLSHSKVQQLWQGIKFMEKLKYLNMAFSKNLKRMPDLSGVPNLEKLILKGCEGLTEVHPSLVHHKKVALMNLEDCKNLKSLPGKLEMSSLKKLILSGCCEFEFLPEFGGKMENLSVLALEGTAIKKLPSSLGCLVGLTNLNLKDCKTLVCLPDTIHGLNSLIILDISGCSKLYRLPDGLKELKSLEELHANDTSIDELPSSIIFLDSLKVLSFAGCKRPLTKSMNWFLPFNWMFRSQPDSTGFRFPTSGWSFPSLKCLNLSYCNLSEESIPNYFRHLSSLKSLDLTGNNFVIIPSSISKLSRLRFLTLNWCQKLQLLPDLASSMIQLDASNCGSLETTKFNPAKPCSLFTSPRQLSYFQKLCQTSDGFYLPCARFDMFIPGKEIPSWFVPQRTVSWAKIHVPNNCPLDEWVGFSLCFLLESYADPPELCKHEIECYLFSRNGKKLITTRRLPPMDPCYPHLYILYLSIDQFRDEILKDDFWSDIEFALKCYCCNSLQVVRCGCRLVCKQDVEDWNKLKSKFNENARAMNALDKYLYKMSKVMQDDSVSSMLTPADKMKINSAIIKGKSLIDNHGNQHRETCVFVDFMKELESIFESTLKKINKDYLLL 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01774 1217 Pfam NB-ARC domain 206 435 IPR002182 GO:0043531
Tsu04g01774 1217 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 764 - -
Tsu04g01774 1217 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 162 IPR035897 -
Tsu04g01774 1217 SUPERFAMILY L domain-like 761 1029 - -
Tsu04g01774 1217 Pfam TIR domain 20 197 IPR000157 GO:0007165
Tsu04g01774 1217 Gene3D - 18 183 IPR035897 -
Tsu04g01774 1217 Gene3D - 184 347 IPR027417 -
Tsu04g01774 1217 SMART till_3 19 159 IPR000157 GO:0007165
Tsu04g01774 1217 Gene3D - 352 435 IPR042197 -
Tsu04g01774 1217 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 764 IPR044974 GO:0006952
Tsu04g01774 1217 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 746 1074 IPR044974 GO:0006952
Tsu04g01774 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 445 IPR027417 -
Tsu04g01774 1217 PRINTS Disease resistance protein signature 765 781 - -
Tsu04g01774 1217 PRINTS Disease resistance protein signature 386 400 - -
Tsu04g01774 1217 PRINTS Disease resistance protein signature 218 233 - -
Tsu04g01774 1217 PRINTS Disease resistance protein signature 293 307 - -
Tsu04g01774 1217 SUPERFAMILY L domain-like 492 828 - -
Tsu04g01774 1217 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 746 1074 - -
Tsu04g01774 1217 Gene3D - 1132 1212 IPR029048 -
Tsu04g01774 1217 ProSiteProfiles TIR domain profile. 18 184 IPR000157 GO:0007165
Tsu04g01774 1217 Pfam C-JID domain 988 1121 IPR045344 -
Tsu04g01774 1217 Gene3D Ribonuclease Inhibitor 840 973 IPR032675 -
Tsu04g01774 1217 Gene3D Ribonuclease Inhibitor 551 694 IPR032675 -
Tsu04g01774 1217 Gene3D Ribonuclease Inhibitor 695 836 IPR032675 -
Tsu04g01774 1217 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 1136 1210 IPR029048 -
Tsu04g01774 1217 SMART LRR_typ_2 720 743 IPR003591 -
Tsu04g01774 1217 SMART LRR_typ_2 861 885 IPR003591 -
Tsu04g01774 1217 SMART LRR_typ_2 886 909 IPR003591 -
Tsu04g01774 1217 SMART LRR_typ_2 791 814 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01774 Tsu-Chr4 18954611 18959272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01774 20 827 WRKY Transcription Factor Family AT4G12020 30.602 1.57e-102 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01774 - - gmx:100815486 1486.86