Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01770 ATGGAAGAAACAGAAGAGATGGAGGGAAATGCAGAACAAGAACCCAACGACGAGGCAGCcaacgaagaagaagaatgcaAAGCCGTTGCGGTGGTGGTGGAGATCCAACATGTCATCGAATCAGTGGTTCAATTCGGAGAATATCGAAGAACACAGAGAAAAGAATCACACGTTCTTGCTCGTCGTTTCAAACACATTTTGCCTCTTATGGAAGATCTTCGTGATCTTCAACAACCTGTTCCTCAAAACGGTGTCGTTTGGTTGAGAAACCTAAGGGATGCACTTTTGTTGGCAAAAGATTTGTTGAAATTGTGCAGCCAAGGAAGCAAAATTCACCTGgcATTAGAGGGGGAGGCGGTTATGATCAAATTTCAGAAGGTTTATGAAAAATTAAGCCAAGCTTTTAATGGTGTGCCTTGTGATGAATTGGGGATTTCTGATGAAGTAAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAACTAGCAATGGATATGATGGTGGTGTTCTCCGATGACCATGATCGTAATGCCGATAGTGCTATTGTTGAAAGGCTTGCAATAAAGTTAGAGCTTCACAGTGTTGAAGATCTTGAGGTAGAAACAGTGGCTGTAGGAAACCTTgttagagaaagaaaaagacaaCAAGCTGAGAGTACACAGAAAATAATTGATCTTCTTAACAGATTCAAAAGGGTTGCAGGCATGGAAGAAACTCCTATTGTCCTAGGTGATCCTGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTAGTCATCCCTCATGAGTTTCTATGTCCAATTACACTAGAAATCATGACTGATCCTGTTATTGTTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCATATAACCTGCCCAAAGACAAGGCAACCTCTAGAACATCTTCAATTAGCACCAAATTGTGccttaaaaaacttaattgtTGAATGGTGTGAGAACAACAACTTCAAACTTCCAAAAATCTCCAACTCATCATGTCAAGAAGGCTCTCCAACTGAAAACCAAGAAGAAATTCCATCTTTGGTTGAAAGCCTAGGGTCTATCAACTTAGAACATCAGAGAAAAGCGGTCGAAAGAATCCGCATGTTATCAAAAGAAAATCCAGAGAATAGAGTTTTAGTCGCGGAGCATGGAGGAATACCACCATTAGTACAACTACTATCATATCCAgattcaaaaataaaagaacatgCTGTTACAGCACTTTTGAATCTATCAATTGATGAAGACAACAAGAAACTTATATCAAATGAAGGTGCTATTCCAGCTATTATAGAAGTGTTGGAGAATGGAAGTATTGTAGCTAAAGAAAACTCTGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAATAAAGAGATTGTAGGAATATCAAATGGGATTCCACCTTTGGTTAACTTATTACAAAATGGAACAGTTAGAGGGAAAAAAGATGCTGCTACAGCACTTTTTAGCTTATCATTAAACAATGCAAATAAAGATAGAGCTATAAGAGCAGGAATTGTTACACCTTTACTTCAATTGTTACAAGACACAAACTTGGGAATGATTGATGAAGCACTGTCTATTTTGTTGTTACTTGTGTTGAATCCTGAAGGAAGACATGAGATTGGACAGTTATCATTCATTGAAATTCTTGTTGGGTTTACTAGAGAAGGAACTCCTAAGAATAAGGAATGTGCAGCTTCTGTTCTTCTTGAATTGTGTTCAAGTAATTCTTCTTTTACTTTGGCTGCACTTCAGTTTGGAGTTTATGATCATTTAATTGAGATGAAACAAAGTGGCACAAATAGAGCACAGAGGAAAGCAAATGCAATTTTAGATCTCATTAGCAAGAGTGagcaaatttaa 1941 0.3679 MEETEEMEGNAEQEPNDEAANEEEECKAVAVVVEIQHVIESVVQFGEYRRTQRKESHVLARRFKHILPLMEDLRDLQQPVPQNGVVWLRNLRDALLLAKDLLKLCSQGSKIHLALEGEAVMIKFQKVYEKLSQAFNGVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDDHDRNADSAIVERLAIKLELHSVEDLEVETVAVGNLVRERKRQQAESTQKIIDLLNRFKRVAGMEETPIVLGDPAMPNKMLGRSTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFKSNHITCPKTRQPLEHLQLAPNCALKNLIVEWCENNNFKLPKISNSSCQEGSPTENQEEIPSLVESLGSINLEHQRKAVERIRMLSKENPENRVLVAEHGGIPPLVQLLSYPDSKIKEHAVTALLNLSIDEDNKKLISNEGAIPAIIEVLENGSIVAKENSAAALFSLSMIDENKEIVGISNGIPPLVNLLQNGTVRGKKDAATALFSLSLNNANKDRAIRAGIVTPLLQLLQDTNLGMIDEALSILLLLVLNPEGRHEIGQLSFIEILVGFTREGTPKNKECAASVLLELCSSNSSFTLAALQFGVYDHLIEMKQSGTNRAQRKANAILDLISKSEQI 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01770 646 PANTHER U BOX DOMAIN-CONTAINING 24 644 - -
Tsu04g01770 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 345 IPR013083 -
Tsu04g01770 646 Coils Coil 146 166 - -
Tsu04g01770 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 489 531 IPR000225 GO:0005515
Tsu04g01770 646 Pfam Armadillo/beta-catenin-like repeat 479 517 IPR000225 GO:0005515
Tsu04g01770 646 Pfam Armadillo/beta-catenin-like repeat 396 435 IPR000225 GO:0005515
Tsu04g01770 646 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 24 644 - -
Tsu04g01770 646 MobiDBLite consensus disorder prediction 1 23 - -
Tsu04g01770 646 Gene3D - 476 645 IPR011989 -
Tsu04g01770 646 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Tsu04g01770 646 SMART arm_5 437 477 IPR000225 GO:0005515
Tsu04g01770 646 SMART arm_5 478 518 IPR000225 GO:0005515
Tsu04g01770 646 SMART arm_5 396 436 IPR000225 GO:0005515
Tsu04g01770 646 SMART arm_5 519 559 IPR000225 GO:0005515
Tsu04g01770 646 SMART arm_5 560 600 IPR000225 GO:0005515
Tsu04g01770 646 Gene3D - 346 465 IPR011989 -
Tsu04g01770 646 Pfam U-box domain 273 343 IPR003613 GO:0004842|GO:0016567
Tsu04g01770 646 Gene3D - 27 139 IPR036537 GO:0007166
Tsu04g01770 646 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 449 IPR000225 GO:0005515
Tsu04g01770 646 SUPERFAMILY ARM repeat 364 641 IPR016024 -
Tsu04g01770 646 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g01770 646 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Tsu04g01770 646 CDD RING-Ubox_PUB 277 319 IPR045210 -
Tsu04g01770 646 SUPERFAMILY RING/U-box 272 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01770 Tsu-Chr4 18937313 18940741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01770 1 646 U-box Gene Family AT5G42340 59.187 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01770 - - cam:101489704 1028.08