Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01768 ATGTCTCTTGCTTCAACTGATCACAATAACATCAAGGGAGTTCTTACTCATGGTGGAAGGTATGTTCAGTACAATATCTATGGTAACATCTTTGAAGTATCGAGCAAGTATGTCCCTCCTATTCGTCCTGTTGGAAGAGGAGCTTATGGTATTGTCTGTGCTGCTGTAAATGCGGAGACACGGGAAGAAGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAACAGAATAGATGCCAAAAGGACCTTACGAGAAATTAAACTTCTCCGGCACATGGATCATGAAAATGTGATAGCCCTTAAGGACATTATACGACCACCACAGACGGAAAATTTCAATGATGTGTACATTGTTTATGAGTTAATGGATACTGATCTGCATCAAATAATTCGTTCCAATCAACCGTTGACTGATGATCATTGTCGGTATTTTCTATATCAGTTGTTACGAGGACTGAAATATGTACACTCAGCAAATGTTCTTCACCGTGATCTAAAGCCTAGCAACTTGCTACTGAATTCCAATTGTGATCTTAAGATTGGAGACTTTGGTCTAGCTCGAACCACGTCGGAAACCGATTTCATGACTGAGTATGTGGTTACTCGATGGTACCGAGCTCCAGAATTGCTTCTCAATTGTTCAGAATATACTGCTGCCATTGATATATGGTCTGTCGGTTGCATCCTTGGAGAAATCATGACAAGACAACCCCTATTTCCGGGAAAAGATTATGTTCATCAGCTCAGATTGATCACCGAGGTATTAGCAACATTGCTTTTGtccatttttatcttttctttataG 804 0.3943 MSLASTDHNNIKGVLTHGGRYVQYNIYGNIFEVSSKYVPPIRPVGRGAYGIVCAAVNAETREEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENVIALKDIIRPPQTENFNDVYIVYELMDTDLHQIIRSNQPLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNSNCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIMTRQPLFPGKDYVHQLRLITEVLATLLLSIFIFSL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01768 267 SUPERFAMILY Protein kinase-like (PK-like) 41 258 IPR011009 -
Tsu04g01768 267 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 14 256 - -
Tsu04g01768 267 Pfam Protein kinase domain 42 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01768 267 ProSiteProfiles Protein kinase domain profile. 38 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01768 267 Gene3D Transferase(Phosphotransferase) domain 1 122 257 - -
Tsu04g01768 267 SMART serkin_6 38 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01768 267 Gene3D Phosphorylase Kinase; domain 1 21 121 - -
Tsu04g01768 267 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 256 - -
Tsu04g01768 267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Tsu04g01768 267 ProSitePatterns MAP kinase signature. 73 176 IPR003527 GO:0004707|GO:0005524|GO:0006468
Tsu04g01768 267 ProSitePatterns Protein kinases ATP-binding region signature. 44 68 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01768 Tsu-Chr4 18924390 18928224 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01768 4 257 MAP Kinase Gene Family AT4G01370 87.402 3.95e-173 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Tsu04g01768 Pkinase 1.9e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01768 K20600 - cpap:110807105 491.115