Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01744 ATGGATTTAGGTTGTAGTTTGCCACAGTCAAGAATTTTACACGGAGCTGTGGGGACTACTTATAGACAAAAATATGTAGGTCAAGTAGGTTTTCTTGACTTTAGGAGAGGTTTTGGTTGTGGATTTTTAGGCAAAAGTGTTTTGAGATCACGTTTTCGTATGGAGAACGAAGTTAGTTGTGTTTCTTCTTGTTGGAATGATTCAAATGTGGTTTCTGGTGGTGAGTTTAAAGTTTTGAACACAAAGAGAAGTATGACATGTAAGAATGAGAAACTTCTTATGGGATCCAGATTCATTTGGTTGAAATGCCAGGGTAATGATTCTTTAGCTTATGTTAATGGCAATGGCCTCAATGTTGATTATGTGGAAGGTTCGGGTGAGGATGCAGCGGTGGTACCTAAATCTAGTGTTGAATTGGATGTTCCAGTGGAAGAAGGAGGGAGGGCTGAGAAGGAAATAGGAGTAGAGGAACAAAGTGTGGATGAATTGAAAGAACTATTGCAAAAGGCCTTGAAAGAGCTAGAAGTTGCACAAATAAATAGTACCATaGCTGCTGTCTATGCCAATAGGGCAGAGAAAAATGCTCAGTTCCTTCAACAGCCAGATGTTATTGTGCCGAGTGCTGAAGAATTTTCTTCTAATGCAAAGCCTCTATTTAGAAAACTCCAGAAAATCCCcaagaaaattaagaaaatcatTGCGTCGTTACCTCAACAAGAGGTGAATGAGGAAGAAGCCTCTCTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTGccaatatttcaaaatatccCTGGAGGTAGTCCTGTTCTTGGCTACTTGGCTGCTGGCATCTTGATTGGGCCTTATGGTCTCTCTATTATTCGTCATGTTCATGCGACAAAAGCAATAGCTGAGTTTGGAGTTGTTTTCCTTTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTCAGTTCTATGaagaaatatgtttttggattAGGTTCTGCGCAGGTTTTAGCAACTGCTGCAGTTGTTGGCTTGGTGGCTCATTATGTGTGTGGCCTACCTGGCCCTGCTGCTATAGTCATTGGGAATGGCCTGGCTTTATCATCCACTGCCGTTGTTCTGCAGGTGTTGCAGGAAAGAGGAGAGAGCACATCACGGCATGGGCGAGCTACATTttctgttttactttttcagGATTTGGCTGTTGTAGTCTTGCTAATACTCATACCTCTTATTTCACCAAATTCTTCCAAAGGAGGGGTTGGGTTTCAAGCCATTGCTGAAGCTCTTGGACTGGCAGCTGTTAAGGCAGCAGTTGCCATTACTGCCATAATTGCAGGTGGACGATTGCTCCTTCGGCCAATATACAAGCAAGTTGCAGAAAATCAAAATGCTGAAATCTTCTCAGCCAATACACTCCTCGTTATTCTTGGGACCAGTCTTCTTACCGCCAGGGCAGGACTTTCAATGGCACTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTGCAGGTTGAATCTGATATTGCGCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGTTGGAATGTCAATCGATCCAAAACTTTTTGTTTCCAACTTCCCAGTCGTCACGGGGACGCTGGCACTCTTAATATGCGGAAAGACTATCTTAGTTTCTTTGATGGGTAGAATCTTTGGGATTTCCCTCATTTCAGCTTTAAGAGCTGGTCTTCTTCTTGCTCCCGGTGGAGAATTTGCATTTGTGGCTTTTGGGGAAGCTGTTAATcagGGCATAATGTCTTCTCAGCTATCTTCTTTGCTGTTTCTTGTTGTGGGCATTTCAATGGCCATCACTCCATGGCTAGCTGCAGGAGGCCAATTGATTGCTTCCCGTTTCGAGCAGCATGATGTTAGAAGTTTATTACCCGTAGAAAGTGAGACAGATGATCTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCACAACTTCTTTCTGAGCGACTTATTCCATTTGTTGCACTAGACGTGAGAAGTGAAAGAGTAGCTGTTGGGCGAGCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGCAGTCGAGAGGTAGTCCTACATAAGGTCGGGGCTGAAAGGGCATGTGCTGCAGCTATAACTCTAGATACGCCTGGAGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGTACTTCCCAAATGTGAAAACTTTTGTTCGCGCCCATGACGTTGATCATGGATTGAATTTAGAAAAGGCCGGAGCTACTGCGGTGGTCCCAGAGACCTTGGAACCAAGTCTTCAACTAGCAGCCGCTGTACTTGCTCAGgCTAAACTCCCCGCATCAGAGATTTCAGCGACAATAAATGAATTCAGATGCCGACATCTAGCTGAGCTTACAGAGCTGTGTGAAGCAAGTGGAAGTTCTCTTGGTTATGGATATACTAGAATTATGAGCAAATCCAAGTCTCAATCCCCAGATACATTAGATTTAGATGAGACCCAAGTCTCTGAAGGGACACTGGCAAAAATTTTTGCTCCGAAAGTTGTCAAAATTCTGTCGAGAATAATCTCTGTTGCTGCTGTTGTATATGCTGTTGGCGTTGTTTTATTCGCCGGTCTTCTTTTGAAAGCCACGGTGTcccatttttCTCGATTTGGATCCTCAGCAGCCAATTTGTCTGCTTCTGTGTCTGCTGCTCTAATCCTGGCCATTGGATTAAATCAATGGATTAGAGCAGCAGACACAGCAGCAGATAAATTGGCTATTGAGGATCCAAATCGATGTTATGAGTAA 2832 0.4244 MDLGCSLPQSRILHGAVGTTYRQKYVGQVGFLDFRRGFGCGFLGKSVLRSRFRMENEVSCVSSCWNDSNVVSGGEFKVLNTKRSMTCKNEKLLMGSRFIWLKCQGNDSLAYVNGNGLNVDYVEGSGEDAAVVPKSSVELDVPVEEGGRAEKEIGVEEQSVDELKELLQKALKELEVAQINSTIAAVYANRAEKNAQFLQQPDVIVPSAEEFSSNAKPLFRKLQKIPKKIKKIIASLPQQEVNEEEASLFDMLWLLLASVIFVPIFQNIPGGSPVLGYLAAGILIGPYGLSIIRHVHATKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAAVVGLVAHYVCGLPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLFVSNFPVVTGTLALLICGKTILVSLMGRIFGISLISALRAGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSERVAVGRALDLPVYFGDAGSREVVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEISATINEFRCRHLAELTELCEASGSSLGYGYTRIMSKSKSQSPDTLDLDETQVSEGTLAKIFAPKVVKILSRIISVAAVVYAVGVVLFAGLLLKATVSHFSRFGSSAANLSASVSAALILAIGLNQWIRAADTAADKLAIEDPNRCYE 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01744 943 Coils Coil 153 180 - -
Tsu04g01744 943 Pfam TrkA-N domain 657 771 IPR003148 GO:0006813
Tsu04g01744 943 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 1 183 - -
Tsu04g01744 943 PANTHER K(+) EFFLUX ANTIPORTER 1, CHLOROPLASTIC-RELATED 185 854 - -
Tsu04g01744 943 TIGRFAM 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 255 535 IPR004771 GO:0006812|GO:0008324|GO:0016021
Tsu04g01744 943 Pfam Sodium/hydrogen exchanger family 254 624 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tsu04g01744 943 Gene3D - 652 817 - -
Tsu04g01744 943 Gene3D - 244 632 IPR038770 -
Tsu04g01744 943 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 183 - -
Tsu04g01744 943 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 185 854 - -
Tsu04g01744 943 ProSiteProfiles RCK N-terminal domain profile. 656 779 IPR003148 GO:0006813
Tsu04g01744 943 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 653 793 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01744 Tsu-Chr4 18605834 18626309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01744 187 851 Inorganic Solute Cotransporters AT1G01790 85.564 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01744 - - gmx:100818163 1088.17