Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g01743 | atgtCATTCACAGGAACTCTTGATAAATGCAAAGCTTGTGATAAGACTGTTTATGTTGTTGACTTGTTAACTCTTGAAGGTATACCTTACCATAAAAATTGCTTCAAATGCAGCCACTGCAAGGGATATCTTACGATGAGCACCTACTCCTCAATGGATGGTGTCCTCTATTGTAAGCCACATTTTGAGCAGCTTTTTAAAGAATCCGGCAATTTCAGCAAGAACTTTCAAACAGCAAAGTCTTCTGAAAAACAAAATGAGGTGAACAGGGCTCCCAACAGATTGTCCTCTATGTTCAGTGGAACTCTAGACAAATGTTCAGTCTGCACAAAAACAGTCTATCCTTTGGAAAAGATGACACTGGAAGGTGAATGTTACCACAAGAATTGCTTTAGGTGTGCTCATGCAGGTTGCCACCTTACACATTCTTCCTATGCTGCACTAGATGGTGTCCTTTATTGCAAGCACCATTTTCAACAGCTTTTCATGGAGAAAGGAAACTACAATCATGTACTTCAAGCTGCTGCAAATAAAAAGAATGTAACTCCACCTCCTGAACCAGCTGAACCAGTTGAACCAACTGAATCAGCTGATGTTGCTGATGCTGTTGATGAACCATCAAAGCCAGAAGAAGTAGCTGAGGAACAGACAGAAGAAAAGTCTGAGACACAGGAAGATTGA | 681 | 0.4053 | MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFKCSHCKGYLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQTAKSSEKQNEVNRAPNRLSSMFSGTLDKCSVCTKTVYPLEKMTLEGECYHKNCFRCAHAGCHLTHSSYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAANKKNVTPPPEPAEPVEPTESADVADAVDEPSKPEEVAEEQTEEKSETQED | 226 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g01743 | 226 | Gene3D | Cysteine Rich Protein | 102 | 170 | - | - | |
| Tsu04g01743 | 226 | SMART | lim_4 | 105 | 157 | IPR001781 | - | |
| Tsu04g01743 | 226 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Tsu04g01743 | 226 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Tsu04g01743 | 226 | Pfam | LIM domain | 106 | 161 | IPR001781 | - | |
| Tsu04g01743 | 226 | ProSiteProfiles | LIM domain profile. | 104 | 164 | IPR001781 | - | |
| Tsu04g01743 | 226 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 132 | 171 | - | - | |
| Tsu04g01743 | 226 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Tsu04g01743 | 226 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Tsu04g01743 | 226 | PANTHER | GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 200 | - | - | |
| Tsu04g01743 | 226 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Tsu04g01743 | 226 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Tsu04g01743 | 226 | PANTHER | OS06G0237300 PROTEIN | 1 | 200 | IPR045268 | GO:0051015 | |
| Tsu04g01743 | 226 | MobiDBLite | consensus disorder prediction | 178 | 226 | - | - | |
| Tsu04g01743 | 226 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 98 | 131 | - | - | |
| Tsu04g01743 | 226 | MobiDBLite | consensus disorder prediction | 201 | 215 | - | - | |
| Tsu04g01743 | 226 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Tsu04g01743 | 226 | Gene3D | Cysteine Rich Protein | 5 | 72 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g01743 | Tsu-Chr4 | 18578809 | 18582129 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Tsu04g01743 | LIM | 1.3e-09 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g01743 | - | - | gmx:100779513 | 381.333 |