Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01741 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACTGCTGAAGAGGATGAAATTCTTGCTAACTATATCAACAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCCAAGATCACAGGTCTTCTTCGTTGTGGTAAGAGTTGTAGGCTTAGGTGGACCAATTATCTGAGACCTGACATTAAACGTGGTCCCTTTACTCCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTTGGAAATAGGTGGGCTGCAATTGCTTCTCAGTTACCGGGAAGAACGGACAATGAGATAAAGAACTTCTGGAACACGCATTTGAAGAAACGTCTGAAAAGCATGGGGATTGATCCAAAAACACATGAGCCAGTAGCTTCATCAAGTTACCCCAATAACAAGTCACATGCCTCGATTTCGACACGTCACATGGCTCAATGGGAGAGTGCAAGGCTTGAAGCAGAAGCAAGACTCTCAATTGAGTCATCacacttcaacaacaacaacaacaatcctAATTCCATTACAAAAACTGATTCTTCTTCTGATTACTTTCTCCGTATATGGAACTCTGAAGTTGGCGACGCATTTCGCAATGTTAACAAAATTACTAGCTGCTGTCACAGTCCTATTTCTGCAGGATCATTATCTACCAACAAATCTGACTCTGTTACTGCAGAATTAGCCTCTAATAATCCAATAAGCCATAGTGTGAAAGAAGAGTGTGAGTGGAAAAACTATAAGCTTGGATCTGATTCATCAAGCTCTAATGACATGGAAGATTCATCAGACACTGCTTTGCAGCTCTTGTTGGATTTTCCTATGAACAATGACATGAGCTTCTTGGAAAACTCTTGTTTTTTCCCTTTAAGCATTTGTCACTACTAG 903 0.4031 MGRTPCCDKKGLKKGPWTAEEDEILANYINKNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGIDPKTHEPVASSSYPNNKSHASISTRHMAQWESARLEAEARLSIESSHFNNNNNNPNSITKTDSSSDYFLRIWNSEVGDAFRNVNKITSCCHSPISAGSLSTNKSDSVTAELASNNPISHSVKEECEWKNYKLGSDSSSSNDMEDSSDTALQLLLDFPMNNDMSFLENSCFFPLSICHY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01741 300 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tsu04g01741 300 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Tsu04g01741 300 Gene3D - 70 145 - -
Tsu04g01741 300 CDD SANT 16 62 IPR001005 -
Tsu04g01741 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 292 - -
Tsu04g01741 300 PANTHER PROTEIN ODORANT1-LIKE 1 292 - -
Tsu04g01741 300 SMART sant 13 64 IPR001005 -
Tsu04g01741 300 SMART sant 67 115 IPR001005 -
Tsu04g01741 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Tsu04g01741 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Tsu04g01741 300 Gene3D - 11 68 - -
Tsu04g01741 300 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu04g01741 300 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tsu04g01741 300 CDD SANT 70 113 IPR001005 -
Tsu04g01741 300 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01741 Tsu-Chr4 18559270 18562917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01741 1 288 MYB Transcription Factor Family AT3G61250 62.069 6.65e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu04g01741 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01741 K09422 - gmx:100816569 445.662