Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu04g01739 | ATGAACAACAGAGGTAGATATCCACCTGGGATGGGGTTAGGgcgaggtggtggtggtggtggtggtttgaACTCGAACACGAACACTGGTTATCAACAGAGgccacatcaacaacaacaacaacagtatGTGCAGAGGCACATGGTGCAAAATCAGCATCCGCAACAATACCATCAGCAGAATCAACAGAATCATCAGTATCagcaacaacagcagcagcagcaacaacagtGGCTGAGAAGGAACCAGTTGGGTGGCACTGACACCAACAATGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCAAACGACACTAGttCACAAGATTGGAAGGCAAGACTAAAGCTTCCACCAGTTGATACACGCTATAGGACAGAGGACGTGACAGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAACTGCTAATGGGAATATATGAGAAGGGGTTTGAAAGGCCATCCCCAATCCAAGAAGAAAGCATCCCAATTGCCCTTACTGGTAGCGACATTCTTGCTAGGGCTAAAAATGGAACAGGAAAAACAGCTGCGTTTTGCATTCCTGCATTGGAAAAAATTGATCAAGATAATAATATTATTCAAGTTGTTATACTGGTTCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTTTGTAAAGAGCTTGGAAAGCATTTACAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCCTGAAAGATGACATTATGCGTTTATATCAACCTGTTCATCTGCTAGTTGGTACTCCAGGAAGAATATTGGATCTTGCAAAGAAGGGTGTCTGTGTTCTGAAAGATTGTTCTATGCTCGTCATGGATGAGGCTGATAAACTTCTCTCCCAGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCCTCAAACCGTCAAATCCTAATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAATGATAGATATCTTCGTAAGCCGTATATCATTAACCTTATGGATGAACTAACTCTGAAGGGTATTACACAATTTTATGCATTTGTGGAGGAGAGGCAGAAGGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATTAACCAGTCAATCATCTTCTGCAATTCTGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTAGGGTATTCATGTTTCTATATCCATGCTAAGATGTTGCAAGACCACCGTAATAGAGTTTTTCACGACTTCCGCAATGGTGCCTGCCGGAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTGAATGttgttattaattttgattttcccAAGAACTCAGAAACATATCTGCACAGGGTTGGTCGATCAGGGAGGTTTGGACACCTTGGTTTAGCAGTGAACTTGATAACCTATGAGGATCGCTTCAATTTGTATAGGATTGAGCAAGAACTCGGCActgaaataaaacaaattccTCCGTTCATTGATCAGGCAATATATTGTCGGTGA | 1530 | 0.383 | MNNRGRYPPGMGLGRGGGGGGGLNSNTNTGYQQRPHQQQQQQYVQRHMVQNQHPQQYHQQNQQNHQYQQQQQQQQQQWLRRNQLGGTDTNNVEEVEKTVQSEANDTSSQDWKARLKLPPVDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSQEFQPSIEQLIQFLPSNRQILMFSATFPVTVKDFNDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR | 509 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu04g01739 | 509 | Coils | Coil | 57 | 77 | - | - | |
| Tsu04g01739 | 509 | Gene3D | - | 340 | 508 | IPR027417 | - | |
| Tsu04g01739 | 509 | SMART | ultradead3 | 154 | 350 | IPR014001 | - | |
| Tsu04g01739 | 509 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
| Tsu04g01739 | 509 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 166 | 336 | IPR014001 | - | |
| Tsu04g01739 | 509 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 | 3 | 509 | - | - | |
| Tsu04g01739 | 509 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 135 | 163 | IPR014014 | GO:0003724 | |
| Tsu04g01739 | 509 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 282 | 290 | IPR000629 | - | |
| Tsu04g01739 | 509 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 | 3 | 509 | - | - | |
| Tsu04g01739 | 509 | Pfam | Helicase conserved C-terminal domain | 361 | 467 | IPR001650 | - | |
| Tsu04g01739 | 509 | SMART | helicmild6 | 386 | 467 | IPR001650 | - | |
| Tsu04g01739 | 509 | Gene3D | - | 89 | 339 | IPR027417 | - | |
| Tsu04g01739 | 509 | MobiDBLite | consensus disorder prediction | 21 | 79 | - | - | |
| Tsu04g01739 | 509 | CDD | SF2_C_DEAD | 347 | 476 | - | - | |
| Tsu04g01739 | 509 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 346 | 506 | IPR001650 | - | |
| Tsu04g01739 | 509 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 205 | 489 | IPR027417 | - | |
| Tsu04g01739 | 509 | CDD | DEADc_DDX6 | 137 | 337 | - | - | |
| Tsu04g01739 | 509 | Pfam | DEAD/DEAH box helicase | 160 | 324 | IPR011545 | GO:0003676|GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu04g01739 | Tsu-Chr4 | 18546694 | 18551381 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu04g01739 | 135 | 499 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 38.692 | 1.20e-94 | 291 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu04g01739 | K12614 | - | tcc:18614173 | 833.943 |