Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01731 ATGGATCACGGGGACCATATGGCATTACCCGGTTCTGCATCTTACTATATGCAGCAGAGAGGACTAGCTGGTTCTGGAGCACAACCTGAGTTACATGTTTCACCGAGTTTTAGTCAACTGTCTAATTCCAATCTACCATTTCAATCCAGCATTGGTGGTGGTAGTAACATTGGATCAACATTACCTTTAGAATCTTTACCAATTTCATCTCAAGGTGTCAATGTCAGTGGTCCTACCGGGGTACCATCTGGGGAGACTGTGAAAAGGAAGAGAGGAAGGCCGAGGAAATATGGCTCTGATAGAGTTGTGTCATTGGCACTAAGTCCAAGTCCAGCACCATCTAGTAATCCCGGAACCGTGACGCAAGGAGGCCCGAAACGAGGGAGAGGGCGTCCTCCTGGGAGTGGGAAGAAACAACAATTGGCTTCTTTTGGTGAGTCGATGCCTGGTTCAGCTGGGGTGGGATTCACTCCACATGTCGTCCATGTTGCAATTGGTGaaGACATTTCAACAAAAGTCATAGCATTGTCTCAGGTGCGGGCTAGGGCTTTATGTGTCCTTTCCGGTTTTGGCAGTGTCTCAGCTGTCACACTTGGGCAGCCTTCGAGTTCAGGTGGCACTGTCCAATATGAGGGACATTTTGAAATCCTGAGCCTGTCAGGCTCTTTGTTGCCAACTGAGAATGGCAGCATACGGGACCGAGCTGGTGGGATAAGTGTTATGCTTTCTAGTCCCGAAGGCCGCGTATTTGGCGGAAGAGTTGCTGGGCAGCTAATTGCTTCAGCTCCTACTAAGGTGATGATTGGGACCTTTCTATGGGGTAGATTAAATGCAAAGAACAAGAAAAAGGAAAGCTCAGAAGATGCCGAAGGTGTCGTGGAATCAGTTCATCAAGGAGCTCATAATCCAGGTGCACTGAATAGCATTTCACCAAACCAAAATCTGACTCCAACCTCATCTTTAAGTCCTTGGTCAGCAGCATCGCGGCCGATGGATATGCGTAATTCTCACGGTGACATTGATTTAATGCGTGGTTGA 1038 0.4798 MDHGDHMALPGSASYYMQQRGLAGSGAQPELHVSPSFSQLSNSNLPFQSSIGGGSNIGSTLPLESLPISSQGVNVSGPTGVPSGETVKRKRGRPRKYGSDRVVSLALSPSPAPSSNPGTVTQGGPKRGRGRPPGSGKKQQLASFGESMPGSAGVGFTPHVVHVAIGEDISTKVIALSQVRARALCVLSGFGSVSAVTLGQPSSSGGTVQYEGHFEILSLSGSLLPTENGSIRDRAGGISVMLSSPEGRVFGGRVAGQLIASAPTKVMIGTFLWGRLNAKNKKKESSEDAEGVVESVHQGAHNPGALNSISPNQNLTPTSSLSPWSAASRPMDMRNSHGDIDLMRG 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01731 345 CDD DUF296 157 271 IPR005175 -
Tsu04g01731 345 ProSiteProfiles PPC domain profile profile. 152 294 IPR005175 -
Tsu04g01731 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 158 271 IPR005175 -
Tsu04g01731 345 MobiDBLite consensus disorder prediction 108 122 - -
Tsu04g01731 345 Gene3D - 158 290 - -
Tsu04g01731 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 318 - -
Tsu04g01731 345 MobiDBLite consensus disorder prediction 301 326 - -
Tsu04g01731 345 MobiDBLite consensus disorder prediction 31 52 - -
Tsu04g01731 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 318 IPR039605 GO:0003680
Tsu04g01731 345 MobiDBLite consensus disorder prediction 20 52 - -
Tsu04g01731 345 MobiDBLite consensus disorder prediction 69 149 - -
Tsu04g01731 345 MobiDBLite consensus disorder prediction 283 345 - -
Tsu04g01731 345 PRINTS AT-hook-like domain signature 88 98 IPR017956 GO:0003677
Tsu04g01731 345 PRINTS AT-hook-like domain signature 124 135 IPR017956 GO:0003677
Tsu04g01731 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 156 277 - -
Tsu04g01731 345 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Tsu04g01731 345 SMART AT_hook_2 88 100 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01731 Tsu-Chr4 18371621 18378790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01731 1 345 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.027 9.10e-77 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01731 - - cam:101500720 444.121