LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g01721	ATGGGTGTTGGTGGTAATTTCTGGGACTTGTTGAAGCCCTATGCACGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTGTTGACTTATCGTTTTGGATTGTTCAGCATAACAATGCTATCAAAACCCATGTCAACAAACCTCACCTCAGACTCACTTTCTTTCGTACGATTAATCTGTTTTCTAAGTTTGGAGCATTTCCCGTGTTTGTTGTTGATGGGACTCCATCGCCATCGAAATCACAAGCCAGGATTGCTAGATTTTTCCGGTCATCTGGAATTGAAATGACTAGCTTGCCGGTACCTGGAAGCGGTGTTTCAGCTGAGAGGAACAGTTCATTTTCAAGATGTGTTCAAGAGTGTGTGGAACTTGCTAAGCTACTTGGGATTCCTGTACTGAAGGCTAAAGGAGAGGCTGAAGCACTTTGTGCCCAGTTAAATAGTGAAGGTCATGTAGATGCATGCATCACACCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGCATTATAAAATCTTTCGCTCCCAATTCCAAAGAACCGTTTGAATGCTACAATATGTCAGATATTGAAGCTGGGCTTGGATTGAAGAGGAAACACTTAATAGCTATCTCTCTTCTGGTTGGAAATGATCACGATTTGAATGGTGTTCAAGGGATTGGACTTGACAGTGCTCTTCGTTTTGTTCAAGCTTTTAGTGAAGATGATGTATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTTCAAATTCCTATTGACATTAAATCTGAGGAAAATATGGATATTGATGGGAGCTCCTCAAATACGAAACAACCTCACTGTTCATTCTGTGGGCATCCAGGCAGCAAAAAAGATCATACGAAGTTTTCGTGTGAATTTTGTGTCACAGATGACCATGAAAGTTGCCTAAAAAAACCAGAGGGTTTTAAATGTGATTGCTTCTCTTGTGGTATGAATAGGAAACATAAGGAGCAGAAAAAGATGGAAAGTTGGCACACAAGAATTTGTGACAAGATTGCAAAGGAGCCAAATTTTCCAAAGGACGAAATCATTGATATGTATTTATGCAATGACAATGGTTATTTTTCTGCAAATGACGGCCCTCAGATCTCATGGGAACAGCCAAAAGTTGAACTCCTGATTGGTTTTCTAAACTTCCATCAGCACTGGGATCCGTCATACATTCGACGGATGATGTTTCCTATGATGTCCACCATCTTCTTGAGAGAAATGGCTACAACTACAACAGATAATCTGTTGTTTGGACAGTTTGAGTTTGATTCTTTAAAACGTGTGAAAACAAGATACGGATATCAGTTTTATGTTGTCAAGTGGAAACGTGTGATGGGCAATGTTGCTTCTAAAACTCCATCAAATCAATCTGGCACGCAACAAGATGCTATAGATCTAGAGCTCGATGAAAATGAAACGGTGGATCTACATCTACTGGATGATTGTGATTTTCCTGAGACTTGTGAAGAAGGTGGATGTAGTTTTTTGTTGACAGATGAAAATATGGACCTTATAGGTGCTGCTTTTCCGGAAGAAGTGAAAAGGTTTTGGAAGGAACAGGAACTGAAGGAttcgaaaagaaaaaagaattcaaCCTCAAGATCTCAAGAAAATGAAACATCCTCAACATCATCACCAAACTCAAAAGGTGTCCAGCTAAATATAACAGAGTTTTTCCCAACAACCAAAAGTAAACACAATCCAAAACATGGAGAAGAGTCATCATCCAAGAAAAACGATAGCCCGGAGGACAGTGGAGGCTCAAAAATGAAGAGGAAATCGTCAAGTCCTAATATTCCGAAATCTGTTAGGCGTCGCCTTTTGTTTGActag	1857	0.3953	MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSFWIVQHNNAIKTHVNKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPSKSQARIARFFRSSGIEMTSLPVPGSGVSAERNSSFSRCVQECVELAKLLGIPVLKAKGEAEALCAQLNSEGHVDACITPDSDAFLFGAKCIIKSFAPNSKEPFECYNMSDIEAGLGLKRKHLIAISLLVGNDHDLNGVQGIGLDSALRFVQAFSEDDVLNRLHEIGKGNAFQIPIDIKSEENMDIDGSSSNTKQPHCSFCGHPGSKKDHTKFSCEFCVTDDHESCLKKPEGFKCDCFSCGMNRKHKEQKKMESWHTRICDKIAKEPNFPKDEIIDMYLCNDNGYFSANDGPQISWEQPKVELLIGFLNFHQHWDPSYIRRMMFPMMSTIFLREMATTTTDNLLFGQFEFDSLKRVKTRYGYQFYVVKWKRVMGNVASKTPSNQSGTQQDAIDLELDENETVDLHLLDDCDFPETCEEGGCSFLLTDENMDLIGAAFPEEVKRFWKEQELKDSKRKKNSTSRSQENETSSTSSPNSKGVQLNITEFFPTTKSKHNPKHGEESSSKKNDSPEDSGGSKMKRKSSSPNIPKSVRRRLLFD	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g01721	618	MobiDBLite	consensus disorder prediction	529	618	-	-
	Tsu04g01721	618	SMART	xpgn3	1	96	IPR006085	GO:0004518
	Tsu04g01721	618	CDD	PIN_GEN1	2	202	-	-
	Tsu04g01721	618	MobiDBLite	consensus disorder prediction	543	570	-	-
	Tsu04g01721	618	PANTHER	FLAP ENDONUCLEASE GEN-LIKE 1	1	604	-	-
	Tsu04g01721	618	Gene3D	-	198	260	-	-
	Tsu04g01721	618	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	148	168	IPR006084	-
	Tsu04g01721	618	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	70	89	IPR006084	-
	Tsu04g01721	618	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	127	144	IPR006084	-
	Tsu04g01721	618	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	203	218	IPR006084	-
	Tsu04g01721	618	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	25	39	IPR006084	-
	Tsu04g01721	618	Gene3D	-	3	197	-	-
	Tsu04g01721	618	SMART	xpgineu	128	198	IPR006086	GO:0004518
	Tsu04g01721	618	SUPERFAMILY	PIN domain-like	6	213	IPR029060	-
	Tsu04g01721	618	MobiDBLite	consensus disorder prediction	571	598	-	-
	Tsu04g01721	618	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	604	IPR006084	-
	Tsu04g01721	618	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	198	415	IPR036279	-
	Tsu04g01721	618	Pfam	XPG N-terminal domain	1	89	IPR006085	GO:0004518
	Tsu04g01721	618	Pfam	XPG I-region	131	213	IPR006086	GO:0004518

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g01721	16	255	Core DNA Replication Machinery Family	AT5G26680	28.462	5.09e-17	82.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g01721	K15338		-	gmx:100791251	915.605

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g01721	04	18284663	18289372	Tsu04g01721	04	18284663	18289372	ECH