Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01718 ATGTTAGGTTCAGGGACCAATTTGGTTACAACTGTTATTGGATTTGGGATGAGTGCCACTTTCATTGTGTTTGTTTGCACAAGAATAATTTGTGGAAGGCTTAGAGGTGGTGTTGAATCTAGGATGATGTATGAGATTGAATCAAGATTTGATATAGAACAGCCAGAACATCATGTTAATGACCCTGACACTGAACCAGTTCTGATTGAAGCAATCCCTACTTTGAAGTTCAATCAAGAGGCTTTCAGTTCCATCGATGATACACAGTGTGTAATATGTTTGGCAGACTacaaagaaagagaaatattgCGCATCATGCCCAAATGCGGACACACTTTTCATCTTTCGTGCATTGATATATGGCTGAGGAAACAATCTACATGTCCAGTGTGCCGTCTACCATTGAAAAACTCTTCCGAAACAAAACACGTGAGACCTGTGACATTCACCATGAGCCAACCTCTTGACGAGTCACACACATCGGATAGGAACACAGATATCGAGAGGCACACTGAACCAACTGTTGTTAACTCCATACAACCAACTTCTGCAGAATCAGAAGCAAGGCAATGA 573 0.4031 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYEIESRFDIEQPEHHVNDPDTEPVLIEAIPTLKFNQEAFSSIDDTQCVICLADYKEREILRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQPLDESHTSDRNTDIERHTEPTVVNSIQPTSAESEARQ 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01718 190 Pfam Ring finger domain 89 132 IPR001841 -
Tsu04g01718 190 MobiDBLite consensus disorder prediction 152 190 - -
Tsu04g01718 190 MobiDBLite consensus disorder prediction 171 190 - -
Tsu04g01718 190 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Tsu04g01718 190 PANTHER OS02G0676500 PROTEIN 1 177 - -
Tsu04g01718 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 138 IPR013083 -
Tsu04g01718 190 PANTHER OS11G0150450 PROTEIN 1 177 - -
Tsu04g01718 190 CDD RING-H2_EL5_like 89 132 - -
Tsu04g01718 190 SUPERFAMILY RING/U-box 79 139 - -
Tsu04g01718 190 SMART ring_2 90 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01718 Tsu-Chr4 18265558 18267588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01718 70 135 C3H Transcription Factor Family AT4G10160 51.515 3.32e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01718 - - ccaj:109802319 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01718 04 18265558 18267588 Tsu04g01718 04 18265558 18267588 ECH