Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01715 ATGGTGGAAGATGTTGTTGCAGTTGATGCAAGTTGTTCAACAGAAGATTGGTTGTTACATGCAAAGGAACTTGTTCCTGTTGCTCTTGATAAAGCAAGAGAGGTTAAAGGTTTTCCTACTAGATGGAAAATGATTATTTCTAGATTAGAACAGATTCCATCCATGTTATCAAATTTATCGAGTCATCCATGTTTCTCAAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCGAATTCCCTCAGAGGTGCGATCAAATTAGCTGAATTGTGTTTGAAGGAGAAATATGAAGGTAAGCTTCAGATGCAGAGTGATCTGGATGCATTAATCGGGAAAATGGATTTGAATTTACGAGATTGTGGACTTTTGATTAAAACTGGTATGCTCGGCGAGGCTACTTTGCCGTTGACAGTGGCATCTGTGTCAGGTTCTGTGGAACAATCAGATTCTGCAGCACACAACAACATAAGGGAGTTACTCGCACGCCTTCAGATTGGTCACTTAGAAGCGAAACACAAAGCTTTGGACAGTGTTGTTGAGGttatgaaagaagatgagaagaATGTTTTGGCTGTTATGAGTAGGAGTAATATTGCTGCACTGGTTCAATTGCTTACAGCGACATCAACAAGGATAAGAGAGAAAACAGTTACTGTTATATGCTCGCTTGCCGAATCGGGTAGCTGCGAGGATTGGTTAGTTTCCGAAGGTGTTCTTCCAGCTCTTATAAGACTTGTTGAATCAGGAAGTGCTGTAGGTAAAGAAAAGGCTGTGATATCGCTTCAGAGATTATCAATGTCGGCTGAAACGTCGCGCGAAATAGTTGGACATGGTGGCGTTTGTCCGCTTGTTGAGCTTTGTCAAACCGGCGATTCTGTTTCGCAGGCTGCAGCAGCTTGTACATTGAAGAATATTTCAGCTGTTCCTGAGGTGAGACAGGTTTTGGCTGAACAAGGAATTGTTAGGGTTATGATCAATTTGTTAACTTGTGGAATGTTGTTAGGTTCCAAAGAATATGCAGCAGAATGTTTGCAGAATCTCACTGCAAGCAATGAGAGTCTAAAAAGAAGTGTTGTATCCGAAGGCGGTGTTAGGAGTCTTTTAGCTTATCTTGATGGTCCACTTCCTCAAGAATCTGCGGTCGCGGCATTAAGGAATTTGGTTGGATCGGTTTCCGAGACAACTTTGGTTTCATTAGGACTACTTCCTCGTTTGGTTCATGTTTTGAAATCCGGATCGTCAGGAGCACAACAAGCAGCTGCATCAGCAATCTGCCGAGTTTGCAGCTCGACTGAGATGAAGAAATTGGTTGGCGAAGCCGGTTGCATTCCCCTCCTTGTTAAGATGCTTGAGGCTAAACCAAGCAGTGCTAGAGAAATTTCTGCACAAGCATTAGCAAACTTGATGACTGTGTCTTATAATAGAAGAGAAGTTAAGAAAGATGATAAAAGCGTGCCGAATTTGGTTCAGTTGCTTGATCCTAGTCCTCAaaacaatgcaaaaaaatatgcaGTTACTTGCCTTGGATTAATTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGTGCTATTGGATATTTGAAGAAACTTACTGAGATGGATATTCCAGGAGCTCAAAAGCTACATGAGAGATTAGAAAGAGGGAAATTAAGAAGTTTGTTTGGCAAGAAATAG 1686 0.4063 MVEDVVAVDASCSTEDWLLHAKELVPVALDKAREVKGFPTRWKMIISRLEQIPSMLSNLSSHPCFSKNALCKEQLQAVSNSLRGAIKLAELCLKEKYEGKLQMQSDLDALIGKMDLNLRDCGLLIKTGMLGEATLPLTVASVSGSVEQSDSAAHNNIRELLARLQIGHLEAKHKALDSVVEVMKEDEKNVLAVMSRSNIAALVQLLTATSTRIREKTVTVICSLAESGSCEDWLVSEGVLPALIRLVESGSAVGKEKAVISLQRLSMSAETSREIVGHGGVCPLVELCQTGDSVSQAAAACTLKNISAVPEVRQVLAEQGIVRVMINLLTCGMLLGSKEYAAECLQNLTASNESLKRSVVSEGGVRSLLAYLDGPLPQESAVAALRNLVGSVSETTLVSLGLLPRLVHVLKSGSSGAQQAAASAICRVCSSTEMKKLVGEAGCIPLLVKMLEAKPSSAREISAQALANLMTVSYNRREVKKDDKSVPNLVQLLDPSPQNNAKKYAVTCLGLISSSKKCKKLMISYGAIGYLKKLTEMDIPGAQKLHERLERGKLRSLFGKK 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01715 561 Gene3D - 375 545 IPR011989 -
Tsu04g01715 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 4 561 - -
Tsu04g01715 561 Gene3D - 146 374 IPR011989 -
Tsu04g01715 561 Pfam Armadillo/beta-catenin-like repeat 273 308 IPR000225 GO:0005515
Tsu04g01715 561 Pfam Armadillo/beta-catenin-like repeat 432 470 IPR000225 GO:0005515
Tsu04g01715 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 561 - -
Tsu04g01715 561 SUPERFAMILY ARM repeat 157 540 IPR016024 -
Tsu04g01715 561 SMART arm_5 391 430 IPR000225 GO:0005515
Tsu04g01715 561 SMART arm_5 186 226 IPR000225 GO:0005515
Tsu04g01715 561 SMART arm_5 309 350 IPR000225 GO:0005515
Tsu04g01715 561 SMART arm_5 472 514 IPR000225 GO:0005515
Tsu04g01715 561 SMART arm_5 431 471 IPR000225 GO:0005515
Tsu04g01715 561 SMART arm_5 351 390 IPR000225 GO:0005515
Tsu04g01715 561 SMART arm_5 268 308 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01715 Tsu-Chr4 18195916 18199256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01715 207 480 U-box Gene Family AT3G54790 29.391 2.64e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01715 - - gmx:100789140 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01715 04 18195916 18199256 Tsu04g01715 04 18195916 18199256 ECH