Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01709 ATGAACCACGTTGGACACGAGACAGACATTGATACGTCAATACCGATGGTTTTGGCAAGAGAAGCATCAAAGGAAGTGGTGCAAGCAAAGTTAACATCCATATATGGGAAAAGCAGCTTGAGGACTAGTAATGGTTCGAAAAGTTTTTTCAACTTGAAAAATAACAACCCTGAGGACTGCATAGTTATTGGAAGGCCTCAATCACATGGCATCCATACAAAGGGTCCTGGTGTCTCTTCTGTTTTTGAAGTTGAAGGAGAAGGAGAAGGAAGAGCTTGTGGAAACACTTTTCCGACAAAACGTGCACACGTGGAAATGGATGTAAAGCAAAAGCGGGGTGCAATTGGTTCACCCAGTGCACCTGTCTCACCACAATGCGACAACAGTCCTGCCAACAGGCTATATGGTGGTAGATCATATGGTGTTTCACGACGTGGCATCCGCGGTAATTTTGTCCCCCCTATTAAATCCAATGGGAACAATACTGGAAATATAACTTCCCGCATTGCTGGCAACAAGTGTGGTGATTCTGAGTCTACAAAGAAATGCATCTCAAAATTTGGAAATGCTGTATGGTCCTGTCCTGATGGTGAACTTCCTGAGAAGTTAAGGAATTTAGAACCTCGCCTCATTGAACATGTTAGTAACGAGATTATGGATAAAGATCCCAATGTCCTGTGGGATGACATTGCTGGATTGGCCCATGCCAAAAGTTGTGTCGATGAGATGGTCATATTACCTCTGCAACGTCCTGACTTATTTATGGGATGCCGTTCTCCTGGGAGAGGTCTGCTTCTATTTGGTCCACCAATCGGTGAAGGTGAAAAGCTAGTAAGAGCCCTCTTTGGAGTGGCCAGTTGTCGTCAGCCAGCAgtaatttttgttgatgaaatAGATTCACTCTTGTCTCAGCGTAAGTCAGATGGTGAGCATGAAGCAAGCAGAAGGCTAAAGACACAGTTTCTTATTGAAATGGAAGGTTTTGGCGATGGCAACGACCAAATTATGCTTATAGTTCATCCTCATCAAGACAGAAGTACCATATGCATCAGTGCACACAAAATACTATCAACAAGAAACGCAATGGACTCTTTTTACgctatgcatcagcaacaagaggAGATGTTGGAACAAATGCAGTTCATTCAAGCCCAGCAAATACAAATTTCAAAACCAAATGAGATGCATGGCTATTACAACAAATGGGAGAGTTCAGAAGAACGCCATCAAGAACAACTTGACAATATCATACAAGAGTTAGGCAGTTTGAGGCTTCGATTTGacgactttcaaaattatcaaaggCCTCCCCCATGA 1317 0.4123 MNHVGHETDIDTSIPMVLAREASKEVVQAKLTSIYGKSSLRTSNGSKSFFNLKNNNPEDCIVIGRPQSHGIHTKGPGVSSVFEVEGEGEGRACGNTFPTKRAHVEMDVKQKRGAIGSPSAPVSPQCDNSPANRLYGGRSYGVSRRGIRGNFVPPIKSNGNNTGNITSRIAGNKCGDSESTKKCISKFGNAVWSCPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVLWDDIAGLAHAKSCVDEMVILPLQRPDLFMGCRSPGRGLLLFGPPIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHEASRRLKTQFLIEMEGFGDGNDQIMLIVHPHQDRSTICISAHKILSTRNAMDSFYAMHQQQEEMLEQMQFIQAQQIQISKPNEMHGYYNKWESSEERHQEQLDNIIQELGSLRLRFDDFQNYQRPPP 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01709 438 PANTHER FIDGETIN-LIKE PROTEIN 1 271 338 - -
Tsu04g01709 438 PANTHER FIDGETIN-LIKE PROTEIN 1 69 270 - -
Tsu04g01709 438 Gene3D - 271 338 IPR027417 -
Tsu04g01709 438 PANTHER AAA DOMAIN-CONTAINING 271 338 - -
Tsu04g01709 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 329 IPR027417 -
Tsu04g01709 438 Gene3D - 201 270 IPR027417 -
Tsu04g01709 438 Coils Coil 399 426 - -
Tsu04g01709 438 PANTHER AAA DOMAIN-CONTAINING 69 270 - -
Tsu04g01709 438 Pfam ATPase family associated with various cellular activities (AAA) 270 339 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01709 Tsu-Chr4 18158336 18163476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01709 201 328 Calmodulin-binding Proteins AT3G56690 30.864 1.20e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01709 K22766 - gmx:100789161 456.062