Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01703 ATGCCTTCTAGTGCAATCTCACAACCTCATTTATCAACTCCTACTTTGGTTAAATCTATGTTCAACTCACCTGGTCTATCTTTAGCACTTCAAACAAATATGGAAGGACAAGGTGGTGATGCGAATAGATTAATGGCAGGgaattttcatcaaacaaatattaatagtTTGAGAAGgaacagagaagaagaagaagaagaacatgaaAGTAGATCTGGTGGTAGTGATAACATAGATGGTGTTTctggtgatgattttgatgcTGCTAACAATCCACCAAGAAAAAAACGTTATCACCGACATACTCCTCAACAAATTCAAGAACTTGaatcgatgtttaaagagtgtcctCATCCTGATGAAAAACAAAGGCTTGAACTCAGCAAAAGACTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAATTGGAGCGCCACGAGAATTCACTACTTAGGCAAGCAAATGATAAGCTAAGAGTTGAGAACATGTCAATAAGAGAAGCAATGAGGAATCCAATGTGCTCAAATTGTGGAGGACCAGcaattattaatgaaatttCACTTGAAGAACAACATCTAAGAATTGAAAATGCAAGATTAAAAGATGAACTAGAAAGAGTTTGTACACTTGCTAGCAAGTTTTTAGGCCGTCCGATTACGTCGTtaccaaactcaaactcaagttTAGAATTTAGTTTTGTTGGTGTGAACAACAATACTTTGCCTTCAACATTACCCTTAGGACAAGATTTTGGCATGGTGTCAATTTCACCACCTTCAACAATAAGAGCAACAAATAGTAGTAATGGTTTTGATAGATCAATAGAGAGGTCTATGCTTCTTGAACTTGCTTTGGCTGCAATGGATGAGTTAGTGAAAATGGCACAAACTAATGAGCCTCTTTGGATTAGAAGTGTTGAAGGTGGAAGAGAAATTCTTAACCATGAGGAATATAAAAGGACAATAAGTACTTCTTGCATTGGTTTGAAACCAAATGGTTTTGTTTCTGAGGCTTCTAGAGAAAATGGTGTTGTTATCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGAAATGTTCCCTTGTGTGATTGCAAGAACCTCAACAAATGAAGTGATATCTAATGGAATAAATGGAACCAGAAATGGTGCTCTTCAATTgATGCAAGCTGAACTTCAAGTACTATCTCCATTGGTTCCCGTTCGTTTGGTGAATTTTCTAAGGTTTTGCAAGCAGCATGCAGAAGGAGTATGGGCAGTGGTTGATGTGTCTATAGATAGCATCACACAAACTTCACCTTCTTTTCTTAGCTGTAGGAGGCTTCCTTCTGGTTGTCTTGTTCAAGATATGCCAAATGGTTACTCTAAgGTGACATGGGTGGAGCATGCGGAATACGAAGAAAGCCAAGTTCACCAACTCTATAGACCCTTGCTAAGCTTAGGCATGGGATTTGGTGCACAACGTTGGGTTGCAACCCTACAACGCCAATGTGAATGTCTAGCCATCTTAATGTCATCGGCACTTCCATCCAGAGAACAATCAGCAATAAGCTCAGGAGGAAGGCGTAGCATGCTAAAGCTAGCACAACGGATGACAAACAATTTTTGCGCCGGAGTTTGTGCATCAACGGTTCACAAATGGAACAAGTTGAATGCAGGGAACGTGGTCGAGGATGTTAGGGTAATGACGCGAAAGAGTGTCGATGATCCTGGTGAGCCATCGGGGATTGTGCTCAGTGCAGCAACCTCTGTTTGGATACCTTCTTCTCCGCAAAAAGTCTTCAATTTCTTACGCAACGAGAGGCTTCGAAGTGAGTGGGACATACTCTCCAATGGTGGACCCATGCAAGAGATGGCTCACATTGCCAAAGGACATGACCATGGCAACTGTGTCTCCCTCCTACGAGCTAGTGGTATTAATTCAAGCCAAAGTAGCATGTTGATTCTACAAGAAACATGCACAGACGTGTCGGGTTCACTTATTGTGTACGCGCCGGTAGATATACCTGCAATGCATGTAGTAATGAACGGCGGCGATTCAGCTTACGTTGCACTTCTTCCGTCGGGCTTTGCTATCATGCCTGATGGACATAGTGACGATAGTGATAATCAAAGAGTAAATGGATCTCTTCTAACAGTCGCATTTCAGATACTTGTGAATAGCCTTCCTACGGCGAAGCTCACGGTGGAATCGGTTGAGACAGTTAACAATCTCATTTCATGCACCGTTCAAAAGATAAAAGCAGCACTTCAATGTGAGAGTTGA 2313 0.39 MPSSAISQPHLSTPTLVKSMFNSPGLSLALQTNMEGQGGDANRLMAGNFHQTNINSLRRNREEEEEEHESRSGGSDNIDGVSGDDFDAANNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENSLLRQANDKLRVENMSIREAMRNPMCSNCGGPAIINEISLEEQHLRIENARLKDELERVCTLASKFLGRPITSLPNSNSSLEFSFVGVNNNTLPSTLPLGQDFGMVSISPPSTIRATNSSNGFDRSIERSMLLELALAAMDELVKMAQTNEPLWIRSVEGGREILNHEEYKRTISTSCIGLKPNGFVSEASRENGVVIINSLALVETLMDSNRWSEMFPCVIARTSTNEVISNGINGTRNGALQLMQAELQVLSPLVPVRLVNFLRFCKQHAEGVWAVVDVSIDSITQTSPSFLSCRRLPSGCLVQDMPNGYSKVTWVEHAEYEESQVHQLYRPLLSLGMGFGAQRWVATLQRQCECLAILMSSALPSREQSAISSGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVVEDVRVMTRKSVDDPGEPSGIVLSAATSVWIPSSPQKVFNFLRNERLRSEWDILSNGGPMQEMAHIAKGHDHGNCVSLLRASGINSSQSSMLILQETCTDVSGSLIVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIMPDGHSDDSDNQRVNGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01703 770 SMART HOX_1 93 156 IPR001356 GO:0003677
Tsu04g01703 770 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Tsu04g01703 770 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 55 767 IPR042160 -
Tsu04g01703 770 SMART START_1 292 515 IPR002913 GO:0008289
Tsu04g01703 770 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Tsu04g01703 770 CDD homeodomain 94 152 IPR001356 GO:0003677
Tsu04g01703 770 Pfam START domain 292 515 IPR002913 GO:0008289
Tsu04g01703 770 ProSiteProfiles START domain profile. 283 518 IPR002913 GO:0008289
Tsu04g01703 770 Coils Coil 47 67 - -
Tsu04g01703 770 MobiDBLite consensus disorder prediction 53 103 - -
Tsu04g01703 770 SUPERFAMILY Homeodomain-like 79 152 IPR009057 -
Tsu04g01703 770 CDD START_ArGLABRA2_like 287 514 - -
Tsu04g01703 770 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 55 767 - -
Tsu04g01703 770 SUPERFAMILY Bet v1-like 285 515 - -
Tsu04g01703 770 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Tsu04g01703 770 Coils Coil 193 213 - -
Tsu04g01703 770 SUPERFAMILY Bet v1-like 543 763 - -
Tsu04g01703 770 MobiDBLite consensus disorder prediction 56 74 - -
Tsu04g01703 770 Coils Coil 161 181 - -
Tsu04g01703 770 Gene3D - 83 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01703 Tsu-Chr4 18089977 18098336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01703 1 770 Homeobox Transcription Factor Family AT3G61150 64.589 0.0 991
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu04g01703 START 5.4e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01703 K09338 - gmx:100783614 1221.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01703 04 18089977 18098336 Tsu04g01703 04 18089977 18098336 ECH
Tsu08g01164 08 12844441 12851806 Tsu04g01703 04 18089977 18098336 ECH