Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01701 atgaacacttCAAACCCAACACCATCTTCTCCACCGGAATCCACCGCCGACGACACCGAACCATTCCTCCTCCGAACTCGCCGTTCCCTCCACCGCACACCACCACCAGCACTCCGTACCGCATCTCGTTTCATCCGGAGAGCAAGCTCACAACGTATGATGCTCCGTGAACCATCTGTACGTGTCCGAGAGAGTGCGGCAGTTGAGGTTGAAGAGCGTCAGAGAGAATGGGCTTATTCGAAACCAGTGGTAGCACTTGACATAGCATGGAACTTGTCGTTTCTTGTTGTTAGTGTTGTCGTTTTGGGTTTGAGTAATAAAGAGGAACCTTGTGTGCCTCTTAGGGTGTGGATTTTAGGGTACTTGTTGCAAGGATTGGTTCATTCTTTGTGTGTTGTTTCAGAATTTAGAAGAAGGAGAAGGGATAGTGTTTTGGAAGATTCTTCTCATGATTTGGAGAGTGGTCCAACTCCAAGGTGGAGTTTGAGTTCTGATTCTGAGAGTGATTCTGATGTTGATTCTCAAGATAATGAGGAAAATAGTATCATGAAGCACATAGAGTCTGCAAATACCATTCTATCATTCATATGGTGGATTCTCGGGTTCTACTGGGTAACCGCTGGTGGTCAGAGTTTGACAAAGGATTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTTGTCATTGTAGTGATTTGTGTTGCTGTTGCTTGTCTTATTGGAATTGCTGTTTGCTGTTGTCTTCCTTGCATACTTGCGATTTTGTATGCAGTGGCAGATCAGGAAGGGGCAACCAAGGAAGAGATTGACCAGTTGCCAAAATATAAGTTCCGAATGATAAAGGAGTTTAAGAAAGAAGGCGATGCCGAAGAATCATCCAGAGGAGTGATGACAGAATGTGACAGTGATCCAGCGTCTGAGCATGTTATTGCCTTAGAAGATGCAGAGTGCTGTATCTGCCTTTCTGCCTATGATGATGGGGCTGAACTTAGGGAACTTCCTTGCAATCATCATTTTCATTGCACATGCATTGATAAATGGCTGCTAATCAATGCTACCTGCCCTCTCTGCAAATTTAACATTTTGAGCACCGATAACCTCCATGAAGAAGTTTGA 1128 0.4441 MNTSNPTPSSPPESTADDTEPFLLRTRRSLHRTPPPALRTASRFIRRASSQRMMLREPSVRVRESAAVEVEERQREWAYSKPVVALDIAWNLSFLVVSVVVLGLSNKEEPCVPLRVWILGYLLQGLVHSLCVVSEFRRRRRDSVLEDSSHDLESGPTPRWSLSSDSESDSDVDSQDNEENSIMKHIESANTILSFIWWILGFYWVTAGGQSLTKDSPQLYWLCITFLAFDVVIVVICVAVACLIGIAVCCCLPCILAILYAVADQEGATKEEIDQLPKYKFRMIKEFKKEGDAEESSRGVMTECDSDPASEHVIALEDAECCICLSAYDDGAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLHEEV 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01701 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 7 375 - -
Tsu04g01701 375 PANTHER TARGET OF ERK KINASE MPK-1 7 375 - -
Tsu04g01701 375 MobiDBLite consensus disorder prediction 147 176 - -
Tsu04g01701 375 SMART ring_2 321 361 IPR001841 -
Tsu04g01701 375 MobiDBLite consensus disorder prediction 1 16 - -
Tsu04g01701 375 MobiDBLite consensus disorder prediction 1 27 - -
Tsu04g01701 375 CDD RING-H2_RNF111_like 320 364 - -
Tsu04g01701 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 368 IPR013083 -
Tsu04g01701 375 MobiDBLite consensus disorder prediction 154 168 - -
Tsu04g01701 375 Pfam Ring finger domain 320 362 IPR001841 -
Tsu04g01701 375 SUPERFAMILY RING/U-box 311 368 - -
Tsu04g01701 375 ProSiteProfiles Zinc finger RING-type profile. 321 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01701 Tsu-Chr4 18072061 18076736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01701 9 369 C3H Transcription Factor Family AT1G68070 47.671 1.90e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01701 - - gmx:100795425 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01701 04 18072061 18076736 Tsu04g01701 04 18072061 18076736 ECH