Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01697 ATGGATAATAACTATGGTTCATCTTCTCCATATCGGTATCCAAACCCTTATATGTATCCCCCTAACCCTAActctaaccctaaccctaaccctaaccctCATCGACCATATCCACCTCAAGATCCATATGCACATTCTCATGCTCCTCCTTATCCATATCCTTACCTTTCTTCACATTCCTTTAACTATTCCTATCCTAGACCATACCCTCCTCCTCAATTAGTACCCTCAGCTCCACCCGCTTATCCTTATCCATACCATGGTCCTCAAGGAACTCATAATCCTCCTACTCAACCTTCTCATTCACATCATGCTAGCTTATTACAACATGGATCATCCtctaatcattattattatcaacCAAATGCTTCTTATGAAGATCGTCCTGATTCTCATTCGCGTCATAATAGCTACTCTGGTCCTTTCTGGCAAGAGACATCAAGTTCAATaggcggtggtggtggtggtggtggtggagtaTCACAAACTAGTGGCGGTGGTGGTGATAATTTAAGGCCTTCTGCTTATCCGCGTTTGGAGGATCTATTGAACGATGTTAGGTTGTCTGAGAATCAGCCAAATTCTCCGGCGGCGCCAGCTCAACCTTTTACGCATTCGATTTCGATATCCAAGTTGCAACAGAAGAAGGAGGATTTTTATGGATATTCTAATAACTCGTTTTCGGGTTGGGGATCCTCGTACCCGAATCGGGTGAACTCGGGTAGATTTTCAGATTTTTCTAGCTCTGGCTCGTTTAATGACTCGATGTATAATCAGAGCTTGCAGGTTGTTCCGGTTCAGAATAAAGGGTCATTGAGAGTTTTGCTCCTTCATGGAAATTTAGATATATGGGTTCATGAAGCCAAAAATCTTCCGAATATGGACATGTTCCACAAAACATTGGGGGATATGTTTGGTAAATTACCTGGTAGTGTGAGCAATAAAATTGAAGGAACAATGCATAAGAAGATTACTAGTGATCCTTATGTTTCGATTTCAGTGTCAAATGCCGTAATTGGGAGGACTTTTGTCATTAGCAACTCTGAAAATCCTGTTTGGAGTCAACATTTTTATGTTCCTGTTGCACATTACGCAGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATATTGTGGGTTCACAGCTCATTGGTATTGTAGCGATTCCAGTGGAACAAATATACTCAGGGGAAATAGTTGAAGGAGCTTACTCTGTCCTGAATAGTAATGGGAAACCTTGTAAGCAAGGTGCTGTGCTGAGCCTATCCATTCAGTACATCCCAATGGAGAAACTAAGCTTTTATCATCAAGGTGTTGGAGCAGGGCCTGAATATGTCGGAGTTCCCGCCACTTATTTTCCTTTGAGGAAAGGTGGACATGTTACTCTATATCAAGATGCTCATGTTCCAGATGGAATCCTCCCTAATGTGTTGCTTGATAGTGGGATGTTTTATGTAAATGGAAAGTGTTGGCATGACATCTTTGATGCCATAAGTCAAGCTCGCCGCTTGATTTATATCACAGGTTGGTCAGTGTGGCACAAAGTTAGGTTGGTAAGAGATGGCGGTTATGCATCAGATTATACCTTGGGTGATCTTCTCAAGACAAAGTCACAAGAAGGAGTAAGAGTGCTTCTCCTTATTTGGGATGATCCAACCTCAAGAAGTATTTTAGGTTATAAAACTGATGGTGTCATGGCAACTCATGATGAGGAAACTAGACGGTTTTTCAAGCACTCGTCAGTCCATGTACTGCTTTCTCCCCGCACTGCTGGAAAACGACATAGCTGGATAAAGCAAAGGGAAGTTGGAACTATATACACACATCATCAGAAAACTGTAATTGTGGATGCGGATGCTGGAAATAACAGAAGAAAAATTATAGCATTTGTTGGTGGACTTGATTTATGTGATGGGCGATATGATACTCCCCACCACCCTATCTTTAAGACATTACAGACAATACATAAAGATGATTATCACAACCCCACTTTCACGGGTAACACTGGTGGTTGTCCAAGGGAGCCGTGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTCTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCACAAGGGATAAAGAAGTTGAAAATTTCATATGATGACGCTTTACTTAGACTGGAAAGAATTCCAGATGTTATTGGCATTAATGACACTCCTAGTGGTGACAATGATCCTGAATCATGGCATGTTCAGATATTTCGTTCAATTGATTCAAGTTCTGTTAAGAGATTTCCAAAAGATCCAAGAGAGGCAACTGGCAAGAACCTTGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTGAAGGCTATTCGTGCTGCACAGCATTACATTTATATAGAGAATCAATATTTCATCGGGTCTTCTTTCAATTGGAGTCAACATAAAGACCTTGGTGCTAATAATTTAATACCGATGGAAATTGCTCTGAAGATTGCAGAAAAGATTAAAGCAAATGAGAGGTTTGCAGTGTATATAGTTATTCCGATGTGGCCAGAAGGTGTTCCAACAGGTGCTGCCACGCAAAGGATTCTCTTCTGGCAGAATAAAACAATGCAAATGATGTATGAGACAATTTACAAGGCTTTGGTTGAGGCTGGGCTTGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGTAATCGGGAGGCCGTAAATCTGTATGAAAATGTCAATATATCAGGAAATCCTCCTCAAGCAAATAGTCCACAAGTATGTTACTAA 2799 0.3962 MDNNYGSSSPYRYPNPYMYPPNPNSNPNPNPNPHRPYPPQDPYAHSHAPPYPYPYLSSHSFNYSYPRPYPPPQLVPSAPPAYPYPYHGPQGTHNPPTQPSHSHHASLLQHGSSSNHYYYQPNASYEDRPDSHSRHNSYSGPFWQETSSSIGGGGGGGGGVSQTSGGGGDNLRPSAYPRLEDLLNDVRLSENQPNSPAAPAQPFTHSISISKLQQKKEDFYGYSNNSFSGWGSSYPNRVNSGRFSDFSSSGSFNDSMYNQSLQVVPVQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGKLPGSVSNKIEGTMHKKITSDPYVSISVSNAVIGRTFVISNSENPVWSQHFYVPVAHYAAEVHFVVKDSDIVGSQLIGIVAIPVEQIYSGEIVEGAYSVLNSNGKPCKQGAVLSLSIQYIPMEKLSFYHQGVGAGPEYVGVPATYFPLRKGGHVTLYQDAHVPDGILPNVLLDSGMFYVNGKCWHDIFDAISQARRLIYITGWSVWHKVRLVRDGGYASDYTLGDLLKTKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVHVLLSPRTAGKRHSWIKQREVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPHHPIFKTLQTIHKDDYHNPTFTGNTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPQGIKKLKISYDDALLRLERIPDVIGINDTPSGDNDPESWHVQIFRSIDSSSVKRFPKDPREATGKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREAVNLYENVNISGNPPQANSPQVCY 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01697 932 SMART C2_3c 280 402 IPR000008 -
Tsu04g01697 932 MobiDBLite consensus disorder prediction 62 175 - -
Tsu04g01697 932 Gene3D Endonuclease Chain A 750 908 - -
Tsu04g01697 932 Pfam C2 domain 279 404 IPR000008 -
Tsu04g01697 932 Gene3D Endonuclease Chain A 484 718 - -
Tsu04g01697 932 MobiDBLite consensus disorder prediction 14 49 - -
Tsu04g01697 932 MobiDBLite consensus disorder prediction 135 151 - -
Tsu04g01697 932 PANTHER PHOSPHOLIPASE D ALPHA 1 174 922 - -
Tsu04g01697 932 MobiDBLite consensus disorder prediction 65 92 - -
Tsu04g01697 932 MobiDBLite consensus disorder prediction 1 50 - -
Tsu04g01697 932 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 604 639 IPR001736 GO:0003824
Tsu04g01697 932 PANTHER PHOSPHOLIPASE D 174 922 IPR015679 -
Tsu04g01697 932 SUPERFAMILY Phospholipase D/nuclease 450 703 - -
Tsu04g01697 932 Gene3D C2 domain 274 414 IPR035892 -
Tsu04g01697 932 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 277 427 IPR035892 -
Tsu04g01697 932 SUPERFAMILY Phospholipase D/nuclease 784 880 - -
Tsu04g01697 932 ProSiteProfiles C2 domain profile. 257 403 IPR000008 -
Tsu04g01697 932 MobiDBLite consensus disorder prediction 93 121 - -
Tsu04g01697 932 CDD C2_plant_PLD 274 426 - -
Tsu04g01697 932 Pfam Phospholipase D Active site motif 605 639 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01697 Tsu-Chr4 18000496 18007018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01697 70 930 Phospholipase D Gene Family (Wang group) AT2G42010 68.721 0.0 1182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01697 K01115 - gmx:100801286 1452.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01697 04 18000496 18007018 Tsu04g01697 04 18000496 18007018 ECH