LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g01690	ATGGGTAGAGGGAGAGTTGAGCTGAAGAGGatagaaaacaaaatcaacCGCCAAGTTACATTCtcaaaaagaagaaatggcTTATTGAAAAAAGCTTATGAACTCTCAGTGCTATGTGATGCTGAAATTGCCCTAATCATTTTCTCAAGCCGTGGCAAACTCTCTGAATTTGGAAGCTCAACTTCTGGCATTGGCAAAACCCTGGAACGATATCAGAGATGCTCTTTTACTTCTcaaaatgataatgataatgaacaTGAAACTCagAACTGGTACCAAGAGATGTCAAAGCTAAAGGCAAAGTATGAGTCACTTCAAAAGTCACAAAGGCAATTGTTAGGGGAAGATCTTGGACCATTGAACATAAAAGAGCTACAAAATCTTGAGAAGCAACTTGAAGGAGCTTTAGCACAAGCTAGGCAGAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTAGGAAAAAGGAACTCCACCTTGGAGAAATAAATAAGCAAATTCGATTCAAGCTTGAATCAGATGGATTTAATCTGAAAGCATATGAAAGCATGTGGAACTCTACTAATTCTACTACTGTTGCTGGAGGAGGCAACTTTCCTTTTCAACCTTCTGAAACCAATCCCATGGATTGCCAAGCTGAACCTTTCTTGCAAATAGGGTACCAAAACTATGTTCAAGCTGAACAATCCAGTGCTCCAAAGAACATTGTTGCTCCTCTTCCAATCAGGCGATACGCTTATCCACGAGTGACTCCTCGTGGAAAGGAGCAAAAAGATTCGCCTCTGGCATCCTCATGCCCTCCTTGGTGTGGACATCTCTTCAGAAATCGAAGAGGTGGCATTTTGATAGTGTCAGTCTGCATCCTCCACAGCGTGAATAAAGGGGAGGTTAATTTTGAACCGTCTCTTCATCCGTCGGAGACGATGGAGAAGGCCCAGCTTCGAGGGAGGAAGTTCCCTAGCATGTCCATGAAGTTCTTGGACGAGAGCAACAAAGTAGATATACTCTTCAGGGTCATCAAAAACACTCTGAGAGTTTCTCTTAGCAAGCCTTTTAACGTTTGA	1068	0.4036	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFGSSTSGIGKTLERYQRCSFTSQNDNDNEHETQNWYQEMSKLKAKYESLQKSQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKKELHLGEINKQIRFKLESDGFNLKAYESMWNSTNSTTVAGGGNFPFQPSETNPMDCQAEPFLQIGYQNYVQAEQSSAPKNIVAPLPIRRYAYPRVTPRGKEQKDSPLASSCPPWCGHLFRNRRGGILIVSVCILHSVNKGEVNFEPSLHPSETMEKAQLRGRKFPSMSMKFLDESNKVDILFRVIKNTLRVSLSKPFNV	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g01690	355	ProSiteProfiles	K-box domain profile.	88	178	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tsu04g01690	355	Gene3D	-	13	102	IPR036879	GO:0003677\|GO:0046983
	Tsu04g01690	355	Pfam	K-box region	83	172	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tsu04g01690	355	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	1	236	-	-
	Tsu04g01690	355	Coils	Coil	95	115	-	-
	Tsu04g01690	355	SUPERFAMILY	SRF-like	2	92	IPR036879	GO:0003677\|GO:0046983
	Tsu04g01690	355	CDD	MADS_MEF2_like	2	75	IPR033896	GO:0000977\|GO:0045944
	Tsu04g01690	355	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Tsu04g01690	355	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Tsu04g01690	355	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Tsu04g01690	355	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Tsu04g01690	355	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Tsu04g01690	355	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Tsu04g01690	355	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Tsu04g01690	355	Coils	Coil	122	145	-	-
	Tsu04g01690	355	PANTHER	MADS BOX PROTEIN	1	236	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g01690	Tsu-Chr4	17899866	17906833	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g01690	1	239	MADS-box Gene Family	AT2G45650	62.705	1.41e-101	298

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Tsu04g01690		K-box	5.1e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g01690	K09264		-	tcc:18614251	341.273

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g01690	04	17899866	17906833	Tsu04g01690	04	17899866	17906833	ECH
	Tsu08g01222	08	13520196	13529188	Tsu04g01690	04	17899866	17906833	ECH
	Tsu04g02472	04	27922357	27936039	Tsu04g01690	04	17899866	17906833	ECH