Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01675 ATGGGTGCTTACAAGTACGTTTCTGAGCTATGGCGGAAGAAGCAATCGGATGTTATGCGATTCATGCAACGTGTGAGGTGTTGGGAGTATCGTCAACAATCTTCCATTGTTCGTCTCACTAGGCCTACTCGTCCTGATAAGGCTCGTCGTTTGGGTTACAAAGCCAAACAGGGCTATGTTGTTTACCGTGTCCGTGTGAGGAGAGGTGGAAGAAAGAGGCCTGTATCCAAGGGTATTGTTTATGGGAAACCAACAAACCAGGGAGTTACCCAACTCAAGTTTCAGAGGAGCAAGAGGTCAGTTGCTGAGGAGCGTGCTGGACGTAAGCTTGGTGGTCTTAGGGTTCTCAACTCCTACTGGGTCAATGAGGATTCCACCTTCAAATATTTTGAGGTCATTTTGGTCGATGTTGCTCACAGTGCCATAAGAAACGACCCAAGGATCAACTGGCTAACCAATGCCGTCCACAAACACAGGGAACTTCGTGGCCTCACTTCAGCTGGAAAAGAAAACAGAGGTTTGAGTGGCAAGGGGCATCGTTACCACAAAGCTCGTCCATCTCGCAGAGCCAACTGGAAGAGAAACAACACCCTTTCTCTTCGTCGCTACCGTTGA 615 0.4862 MGAYKYVSELWRKKQSDVMRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNAVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01675 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
Tsu04g01675 204 Pfam Ribosomal L15 2 191 IPR000439 GO:0003735|GO:0005840|GO:0006412
Tsu04g01675 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Tsu04g01675 204 MobiDBLite consensus disorder prediction 176 190 - -
Tsu04g01675 204 MobiDBLite consensus disorder prediction 163 190 - -
Tsu04g01675 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Tsu04g01675 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Tsu04g01675 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Tsu04g01675 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01675 Tsu-Chr4 17714324 17716675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01675 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 87.745 8.98e-122 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01675 K02877 - gmx:100305473 372.474