Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01673 ATGAGTTTCTTTCAGGGAATCATTGATTCCTTTAACTCTGTCTTCTCTCCACAATCCATTGATcaaacttcttcttcttcttcttctcaaacCAATCCCACTGCTTCTTCATCAATGGAAGCTTCTCCATCTTCAGTTTCCAATGAACGCGTCGCTTACAAGCTCAAAGGTTACTACGATTTAGCTACTCAAGAGATCGATAAAGCTGTTAGGGCTGAAGAATGGGGATTGATCGATGACGCTATTCTTCACTACAGAAATGCCCATAGGATCCTCCTCGAAGCTAATTCAACTCCTGTTCCTTCCTTTATCACTTCAAGTGAGAAACAGAAAGTACAATCATATCGTCAAAAGATATCAAAATGGCAGGGACAAGTGTCTGATAGATTGCAGGCTCTCAATAGACGAGCAGGTAGCTCAGTTGCCAATCAGAGCACCTCAAACCTTACACAAACTGCCGCAGTTCCAACTAAACTATCAAATACTACaaaaaaagtattacaaaaGAATCCTCAAAGAAAAGACGAGGTGAATAAAGTTCAAAACCCGAAATCTAGTCAATCATCTGGTGAAAATTATGACTCAAAACTGGTTGAAATGATTAACACTGCCATTGTAGATAGAAGTCCTTCTGTCCGGTGGGATGATGTTGGTGGCCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGTAAGACCATGCTTGCCAAAGCAGTTGCTTCAGAATCAGAAGCAACATTTTTTAATGTCACGGCAGCTTCCTTGACGTCAAAATGGGTAGGTGAAGCTGAAAAGCTTGTACGGACACTATTCATGGTAGCTACATCGAGACAGCCATCTGTAATTTTCATTGACGAGATTGATAGTATAATGTCAACAAGGACGGCAAATGAAAATGAGGCCAGCAGACGATTAAAATCAGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATCGTGATTGTAATTGGTGCGACCAATAAGCCACAGGAACTGGATGATGCAGTTCTCAGGAGACTGGTTAAGAGAATATACGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCTTTACCTAGTAGAGATCTAGAGATGCTTGTAAAAGAGACTGAAGGATACTCTGGAAGTGATCTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCTAACATTCTTACCGTCAAGGCAAATCAGGTAAGAGGACTAAAGTATGAGGACTTCAAGAAAGCAATGGCTGTGATCAGACCAAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAGAAGTGGAATGAAGAGTTTGGCTCAAATTGA 1461 0.4018 MSFFQGIIDSFNSVFSPQSIDQTSSSSSSQTNPTASSSMEASPSSVSNERVAYKLKGYYDLATQEIDKAVRAEEWGLIDDAILHYRNAHRILLEANSTPVPSFITSSEKQKVQSYRQKISKWQGQVSDRLQALNRRAGSSVANQSTSNLTQTAAVPTKLSNTTKKVLQKNPQRKDEVNKVQNPKSSQSSGENYDSKLVEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVATSRQPSVIFIDEIDSIMSTRTANENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQAFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGPNILTVKANQVRGLKYEDFKKAMAVIRPSLNKSKWEELEKWNEEFGSN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01673 486 PANTHER AAA DOMAIN-CONTAINING 4 486 - -
Tsu04g01673 486 CDD AAA 236 381 - -
Tsu04g01673 486 Pfam ATPase family associated with various cellular activities (AAA) 251 381 IPR003959 GO:0005524|GO:0016887
Tsu04g01673 486 MobiDBLite consensus disorder prediction 139 167 - -
Tsu04g01673 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 483 IPR027417 -
Tsu04g01673 486 Pfam AAA+ lid domain 406 437 IPR041569 -
Tsu04g01673 486 Pfam Vps4 C terminal oligomerisation domain 452 484 IPR015415 -
Tsu04g01673 486 SMART AAA_5 247 383 IPR003593 -
Tsu04g01673 486 CDD MIT_spastin 55 133 - -
Tsu04g01673 486 MobiDBLite consensus disorder prediction 19 43 - -
Tsu04g01673 486 Gene3D - 47 137 - -
Tsu04g01673 486 SMART smart 55 132 IPR007330 -
Tsu04g01673 486 Gene3D - 382 464 - -
Tsu04g01673 486 PANTHER BNAC04G50250D PROTEIN 4 486 - -
Tsu04g01673 486 MobiDBLite consensus disorder prediction 139 193 - -
Tsu04g01673 486 Gene3D - 210 480 IPR027417 -
Tsu04g01673 486 ProSitePatterns AAA-protein family signature. 353 372 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01673 Tsu-Chr4 17696487 17702978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01673 191 436 Calmodulin-binding Proteins AT3G56690 41.176 6.05e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01673 K13254 - gmx:100780946 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01673 04 17696487 17702978 Tsu04g01673 04 17696487 17702978 ECH