Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01669 ATGAATGTGAGTGAAAATGTGGTGTATGAGGATGAACAAGTGCAGGAAAGTTTGGTCGGGAGGTTGAAATCTCTAACTGTTGAGCCCAGGGATAACACCCGGTTAAGGATTGTGCTGCTGGCATCCGGTGGGCATTTTGCGGGATGTGTCTTTGATGGTGATACAATTGTGGCTCACAAGACATTCCACAGATATGTTGTGAGGGCAAAGGCTGGAAAAAAACAGTCATCTAAAGATGCTTCTGGCAGGACTGTACATTCTGCTGGTGCTTCACTTCGTCGTTACAACGAACTTGCATTAAAAAAGGAAGTTCACGAACTGCTTGCTGCTTGGAGACCATATTTTGATGCTTCTATTTGCATTTTTATACACGCACCTTCAAGTAGTCGTCAACTTCTTTATGATGGAGAAAAGCCATGTTTTACTAATCCGCAATGTGTTAGAAATATTGCTATGATTGTCCGCAGGCCCACTCTAAGGGAAGCCAAGCGCATATATAGTCAATTGACCCTAGTATCCTATGAAGCAGATGAGAAGGAAATTTTACAAAGTAACCAGCAGGACGTGGTGCCAACTCGCATTGCTAAAAGAAATGGCACCCAACCTGTCAGCAAAGTGGAGATGGTTGGGATGGATGAAAATGATAAAGCTGAAGCTTGTTCCAGTAACAAAAATGATGAACCTCTTATTTCGAGTAATGACGAAAGGGAGAACGAGTTACCTGTTAAATCAACTCCTTTACATCAAGCAGCACAATCTGGTGACTCTGAAAAGGTTATGGAACTCCTAGAACAGGGTTTGGATCCATGCATTAAAGATGAAAGGGGACGGACTCCGTATATGTTGGCACCTGACAAGGAAGCCAGGAACACTTTCAGAAGGTTTATGGCTTCAAATCTTGACAAGTGGGATTGGAATGCTGCAAAAGTTCCGAGTGCATTGACCAAAGAATTGGAAGAATCACAAGCTGCTAAGCAGGCAGAAAAAGATGCCAAGAAAAAAGCTAGAGCAAAAGAATTAAAGAAATTACGTaaagcaaaagaaaagaaggCTCAGGCTGAAGCTGCTGAAAAACAAAAGATGGCTTCGACATCTGCTACCAGACAATCTCAACCTAAAAGTGGTGTCAAATTATCAAAAGAGGAGGAAATGAAAAGAGCACAGGATGCAGAAAGAGAAAAGAGAGCAGCTGCTGCAGAGAGAAGAATGGCTGCCCTCAAAATTCAAGCTAATAATAATTCAACCACTTCAGAGGCTAATAAAAGTGGATTAGCCGGTGACATATTATGTTCTTGTTGTAATTCATCGCTTGCTGGTAAAGTTCCTTTCCACCGGTATAATTACAAATACTGCAGCACTTCATGCATGCATGTACACAAAGAGATCCTTGAAGATGGATGA 1401 0.414 MNVSENVVYEDEQVQESLVGRLKSLTVEPRDNTRLRIVLLASGGHFAGCVFDGDTIVAHKTFHRYVVRAKAGKKQSSKDASGRTVHSAGASLRRYNELALKKEVHELLAAWRPYFDASICIFIHAPSSSRQLLYDGEKPCFTNPQCVRNIAMIVRRPTLREAKRIYSQLTLVSYEADEKEILQSNQQDVVPTRIAKRNGTQPVSKVEMVGMDENDKAEACSSNKNDEPLISSNDERENELPVKSTPLHQAAQSGDSEKVMELLEQGLDPCIKDERGRTPYMLAPDKEARNTFRRFMASNLDKWDWNAAKVPSALTKELEESQAAKQAEKDAKKKARAKELKKLRKAKEKKAQAEAAEKQKMASTSATRQSQPKSGVKLSKEEEMKRAQDAEREKRAAAAERRMAALKIQANNNSTTSEANKSGLAGDILCSCCNSSLAGKVPFHRYNYKYCSTSCMHVHKEILEDG 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01669 466 Pfam Bacteroidetes VLRF1 release factor 37 174 IPR041175 -
Tsu04g01669 466 MobiDBLite consensus disorder prediction 216 256 - -
Tsu04g01669 466 Coils Coil 318 363 - -
Tsu04g01669 466 MobiDBLite consensus disorder prediction 358 374 - -
Tsu04g01669 466 SUPERFAMILY Ankyrin repeat 244 298 IPR036770 -
Tsu04g01669 466 Gene3D - 204 313 IPR036770 -
Tsu04g01669 466 Coils Coil 380 407 - -
Tsu04g01669 466 Pfam Vms1-associating treble clef domain 430 461 IPR041540 -
Tsu04g01669 466 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 12 462 - -
Tsu04g01669 466 MobiDBLite consensus disorder prediction 375 401 - -
Tsu04g01669 466 ProSiteProfiles Ankyrin repeat profile. 242 274 IPR002110 GO:0005515
Tsu04g01669 466 MobiDBLite consensus disorder prediction 342 401 - -
Tsu04g01669 466 ProSiteProfiles Ankyrin repeat region circular profile. 242 274 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01669 1 415 C2H2 Transcription Factor Family AT1G01930 54.695 4.88e-138 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01669 K26089 - gmx:100527709 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01669 04 17634520 17641717 Tsu04g01669 04 17634520 17641717 ECH