Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01649 ATGAACATTGCTTCTCTTGAGAAGTTTCTTCAAGAGAGGATTAAGGTCGGCGGTAAAGCCGGTGCTCTCGGTGATTCGGTCACCGTTACCAGGGAGAAGTCTAAGATCACTGTTACCTCTGACAGTAACTTTTCCAAGAGAGAAGAGACAGATAAACGTATAACAATGGCGAACGAAGAGAAGAAAGTGTACAACGAAGAGAAGAGAAGGCAGAAAGATGGAGAAATTTTGGTGATGAAGATAACTGAGAAAAGAACAAGAACACgatgttaa 273 0.4103 MNIASLEKFLQERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKREETDKRITMANEEKKVYNEEKRRQKDGEILVMKITEKRTRTRC 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01649 90 Pfam Ribosomal L22e protein family 1 47 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tsu04g01649 90 Coils Coil 47 67 - -
Tsu04g01649 90 Gene3D - 1 86 IPR038526 -
Tsu04g01649 90 PANTHER 60S RIBOSOMAL PROTEIN L22 1 58 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tsu04g01649 90 PANTHER RIBOSOMAL L22E FAMILY PROTEIN 1 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01649 Tsu-Chr4 17488592 17489159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01649 1 47 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 89.362 7.40e-24 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01649 K02891 - rcu:8278743 89.7373