Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01648 atggATTTGGGATATGGTGGTAGAGATGGTGGTGATGGACCTTGTGGTGCTTGCAAGTTTCTAAGAAGAAAATGTGTGAAAGGTTGTTGCATATTTGCACCATATTTTGAATCATCAGGACAAGGAAGTGCTCATTTTGCAgcagttcataaggtgtttggTGCTAGCAATGCAGCTAAGTTACTGATGAGGATTCCAATTCATAAACGTCTTGATGCTGTTGTTACTCTTTGTTATGAGGCTCTTGCTAGAGCTACTGATCCTGTTTATGGTTGTGTTGCTCACATATTTGCTCTTCAACGACAGGTTGTGCAGTTGCAAGCAGAGTTAGCCTATGTACAAGCCCGTCTTTCAATATTGAATCGCATCTCTCAAGATCCTCAAAACTCATCAATATCTCCAACTATGCATTCCTCATCACTTCATCATTTGTCATCAAACAATGAAACTTCTTACATGTCCATGCAAAATCATCATCCAATACCTTTTGAATTAAGCAACTTTCACAATAACCCATCATACTATTCCTATCATCAACAACTCAATGACCAAGAATTCCAAGCTAATTTGCCTCCAGAAATTTAG 585 0.3692 MDLGYGGRDGGDGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAVHKVFGASNAAKLLMRIPIHKRLDAVVTLCYEALARATDPVYGCVAHIFALQRQVVQLQAELAYVQARLSILNRISQDPQNSSISPTMHSSSLHHLSSNNETSYMSMQNHHPIPFELSNFHNNPSYYSYHQQLNDQEFQANLPPEI 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01648 194 ProSiteProfiles LOB domain profile. 13 117 IPR004883 -
Tsu04g01648 194 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 157 - -
Tsu04g01648 194 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 9 157 - -
Tsu04g01648 194 Pfam Lateral organ boundaries (LOB) domain 14 114 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01648 Tsu-Chr4 17482555 17485796 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01648 6 159 AS2 family AT4G00210 60.645 4.52e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu04g01648 LOB 4.3e-34 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01648 04 17482555 17485796 Tsu08g01271 08 14242097 14247855 PCT