Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01646 ATGGAAGGGAGAGAAGGTAACAACTCAGGAGTAACAGTGATAGGAGCAGAAGCTCCATCAACTTATCATATGGCACCAAGGAGTGAAGCTCCAACCCAACATGGTGCTGTTCCTGAATCCGGAGGTGGAGCTACTGGTGTCTCACCAGTGAGTGTTGGATTGGACGGAGGAACaattaagaagaaaagaggTAGGCCAAGGAAATATGGGCCAGACGGGTCGGTTGCTGCTGTGGCATTGTCCCCATTGCCAATCTCATCTTCGCCTCCTTTTGTTAATGATTTTTCATCGGCGAAGCAGGGGAAACCGAAGGGGATGGAGTTTAAGCAGTCGAAAAAAGTTGGAGTTGATCCTCTAGGTGACTCAGTTGGTACCAACTTTATGCCGCATATCATTACCGTCAATGCTGGCGAGGACATTACAATGAAAGTTATATCTTTTTCGCAACAAGGACCACGAGCTATATGCATCCTATCTGCTAGTGGCGTGATATCAAATGTTACTCTTCGTCAGCCTGATTCTTCTGGCGGTACTTTGACTTATGAGGGCCGTTTTGAGATACTTTCGCTGTCTGGATCATTCATGCCTACCGAGAGCCAAGGAACAATAAGCCGGTCTGGTGGAATGAGTGTTTCTTTGTCAAGCCCTGATGGCCGTGTTGTAGGTGGTGGAGTTGCCGGTCTTCTCGTAGCTGCCACTCCTGTGCAGGTGGTGGTTGGAAGTTTCCTGCCAAGTAACCAACAAGACCAGAACCCGAAGAAGCCAAAATCTGATTATGCAACAGCTAACGTTACCGCACCTATTGCAGTGTCTTCGGAGCCACCTTCAACCAACGGCGAAAGGGTAGATGTCATGTGTGGACACCCAATGCAAAATTCTGGAACACTTAACTCAAACTTTACTCCTCCCTCGGCCTTTCGCAGAGaaaactgggttaacaacatgcACTCCATGCCGGACTCAATGAAGTCTGCAACCGATATTAACATATCTTTGCCTGATAATTAA 1008 0.4613 MEGREGNNSGVTVIGAEAPSTYHMAPRSEAPTQHGAVPESGGGATGVSPVSVGLDGGTIKKKRGRPRKYGPDGSVAAVALSPLPISSSPPFVNDFSSAKQGKPKGMEFKQSKKVGVDPLGDSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTISRSGGMSVSLSSPDGRVVGGGVAGLLVAATPVQVVVGSFLPSNQQDQNPKKPKSDYATANVTAPIAVSSEPPSTNGERVDVMCGHPMQNSGTLNSNFTPPSAFRRENWVNNMHSMPDSMKSATDINISLPDN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01646 335 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Tsu04g01646 335 CDD DUF296 129 242 IPR005175 -
Tsu04g01646 335 MobiDBLite consensus disorder prediction 1 73 - -
Tsu04g01646 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Tsu04g01646 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 127 246 - -
Tsu04g01646 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 334 IPR039605 GO:0003680
Tsu04g01646 335 Gene3D - 129 264 - -
Tsu04g01646 335 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01646 Tsu-Chr4 17455039 17458603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01646 6 272 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 57.616 2.63e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01646 - - gmx:100777213 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01646 04 17455039 17458603 Tsu08g01274 08 14309940 14314505 PCT