Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01630 ATGGGCAACTGCGGTACCAGAGAAGAATCCGCCGTAGTTACCAATGCTCAAGTTCAGCAGTTACATCCTGCTACCGGAGCTAGAAACCAAACCTCCGTCACCGGTGGTGCTACTGAGAGAAAAAACTCTAGTCTCCGACATCATCTAACCGATTCTGCTTCGGATCTGAGCGAGTCTTGTTCAACACCTCGCTGGAACAACGCTAATAACAACAATACTCTTCTTTATACTCATGTTATAGCTTTCACGCTCTATGAACTTGAAACTATAACGAAGAGTTTTCGTGCTGATTATATTTTGGGTGAAGGAGGGTTTGGTACTGTTTATAAAGGCTACATTGATGAAAATGTTAGGGTTGGACTTAAATCGCTTCCTGTTGCTGTTAAAGTTTTGAATAAAGAAGGACTTCAAGGACATCGAGAGTGGCTTgcGGAGGTGAATTTTCTTGGAATGCTTAGGCATCCCAATCTTGTGAAGTTGATTGGTTATTGCTGTGAGGATGATCATAGGTTGCTTGTCTATGAATTCATGTTTCGAGGAAGTCTCGAAAATCATCTATTCCGAAAGGCAACTGTTCCTTTATCATGGGGTACAAGAATGATGATTGCTCTTGGTGCTGCCAAAGGACTTGCCTTCCTCCACAATGCCGAAAGGCCAGTAATCTATCGTGACTTCAAGACGTCTAATATATTATTGGACTCTGACTATACAGCCAAGCTATCTGATTTTGGGTTAGCTAAAGCAGGGCCTCAAGGTGATGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATACGTAATGACAGGCCACCTAACAGCTAGGAGTGATGTATATAGCTTTGGGGTTGTTCTTTTGGAGCTTTTAACGGGACGGAAATCTGTCGACAAAACCAGACCTGGGAAGGAACAAAGCTTGGTTGATTGGGCACGTCCAAAGCTCAACGACAAAAGAAAGCTCCTGCAAATAATTGATCCTAGACTGGAGAATCAATATTCAGTGAGGGCAGCACAGAAAGCATGTAGCCTGGCTTACTACTGTTTAAGTCAAAATCCGAAAGCGAGGCCACTGATGAGTGATGTAGTTGAGACATTGGAACCCTTACAAAGCTCTAGTGTTGGTGCAAATGAAGTCTCATTATCAGGATCAAATAGTGGGAGCGGCGGTCCTTTTGCTATGAATAAAATATCCGACTACCGGATGCGTCACAAGTTTTCAAACAACGTTGGTCCAGGTGCTACATGTCGGTCTCCAAACCCAAATTGCTCACCAGGTCCTCCTGCAGCATTGCGGGTCAGATGA 1320 0.4402 MGNCGTREESAVVTNAQVQQLHPATGARNQTSVTGGATERKNSSLRHHLTDSASDLSESCSTPRWNNANNNNTLLYTHVIAFTLYELETITKSFRADYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLAEVNFLGMLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLSWGTRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSVGANEVSLSGSNSGSGGPFAMNKISDYRMRHKFSNNVGPGATCRSPNPNCSPGPPAALRVR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01630 439 PANTHER OS01G0588500 PROTEIN-RELATED 39 426 - -
Tsu04g01630 439 Pfam Protein tyrosine and serine/threonine kinase 99 371 IPR001245 GO:0004672|GO:0006468
Tsu04g01630 439 Gene3D Phosphorylase Kinase; domain 1 55 176 - -
Tsu04g01630 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Tsu04g01630 439 MobiDBLite consensus disorder prediction 19 61 - -
Tsu04g01630 439 ProSitePatterns Protein kinases ATP-binding region signature. 100 129 IPR017441 GO:0005524
Tsu04g01630 439 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 39 426 - -
Tsu04g01630 439 Gene3D Transferase(Phosphotransferase) domain 1 177 387 - -
Tsu04g01630 439 MobiDBLite consensus disorder prediction 416 439 - -
Tsu04g01630 439 CDD STKc_IRAK 100 374 - -
Tsu04g01630 439 SUPERFAMILY Protein kinase-like (PK-like) 72 372 IPR011009 -
Tsu04g01630 439 ProSiteProfiles Protein kinase domain profile. 94 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01630 439 MobiDBLite consensus disorder prediction 19 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01630 Tsu-Chr4 17245091 17248207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01630 58 384 Glycoside Hydrolase AT3G07070 51.652 2.31e-110 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu04g01630 PK_Tyr_Ser-Thr 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01630 - - gmx:102662348 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01630 04 17245091 17248207 Tsu04g01630 04 17245091 17248207 ECH