Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01612 ATGGCTGCAAATTCTGATAATATCTTGAACTTGTCATTGCGGCCTACTTCAGAGGTTCATGGTGGCATTGATTCTCCCCGGGTTGCAGTGTGTTCTCTTTGCCGCAAGGCCTTATCACCTGATGATGAGATAACAAGTGATCTTTCCACTGGTGGTGTATGCGGTGAttgtaaatttttattgctTGAAGACTTTGGGAATCACACCATTACACAAAGCTCTCGAAGGAGGCTTAGAGGAAGATTGAGACATGGTAGTTCTGAGTCAGTTGAAAACCCGGCATCTGTAGATGAAGATCAATTTGTAGATGGTGATAACCCTGCATGGTCATTGCAATATGCTAGTGCAAATACGACTCCTAGTGGGTCTAGAAGTTGGAGGCATGCTCTCTCTGATACTGACAGTGATGGTTTTGATAATTGGTGTTCTCTTCATGGTGAAACTGAATTTGGTAATTGGTCTCCTCTTTATGGTGAAAATGAATCAAGTTCGAGTTTTAGACCGTATAGGATTCCTCGCAGTGAGActgattctttttctttcagtgTTTATGGAGGTGACTCAGATATTTCTATGGATAGACAGAGTTTTGTAGGCACTGGAATTTTTAATTTACCTGATGAGGGAGTTGCGTTTGAAAGTGACACTGACATAGATCCAATGCATGCTGGCATTGGCCATTGGAATTCGGATGATACGGAAGATGATGACgaagaagaggaggaggagggTGATGAAGACGTGGGGGAAAGAGAACTACCTGAAGTCGACGAAGGTGAAGCCGCTACTGAACCTGAGGGAATATTTAGCCAGATAATCAGAGAAACTTGGTTAGCTTTGGACGACGCTGATTTGCCTCATGGAGCTAATTTCGGAGATTTCCTCGATACTAGACGCTTCGATGATCTGCTTGATCATCTTGCTGAAACTGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGCGTCGTTTGTGAATAATCTTCCTTGTGTAGTCATTAGCAAGGAACACGAGAAGCACGATGAACTAGTTTGTGCCATATGCAAGGATGTTTTGGCCCTTGGCACTGAAGTAAATCAACTTCCATGTTCTCACCTTTACCATTCTCATTGCATTTTGCCGTGGTTGAAGACACGTAATTCATGCCCTCTTTGTCGTTTTGAGCTTCCAACCGATGATAAGGATTACGAAGAGGGAAAACAAAACACTGATGGTAGAAATGTGATCTATGAGAGACAGCAACTAAATGTTATGGATGATAGTTTCTCTGATATTTCTGATGGAGCTGAAGCAGGTGAAGAAGATGGTATCACTACTCATGATACCGCAGATTCTTCTGCAATAAGAGGTGGTAGAGGAAGATGGTTGTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTAGGAATGGTTATTGTACTGTGGTTAGGTAGGAACTCTCAAATTGAAGGGACTAGACATTCAAGTGCTCACTATTTGTCTGTGCAAAATCAGCACGGTGTTCGTGTTTATAGTTCTCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAA 1563 0.4139 MAANSDNILNLSLRPTSEVHGGIDSPRVAVCSLCRKALSPDDEITSDLSTGGVCGDCKFLLLEDFGNHTITQSSRRRLRGRLRHGSSESVENPASVDEDQFVDGDNPAWSLQYASANTTPSGSRSWRHALSDTDSDGFDNWCSLHGETEFGNWSPLYGENESSSSFRPYRIPRSETDSFSFSVYGGDSDISMDRQSFVGTGIFNLPDEGVAFESDTDIDPMHAGIGHWNSDDTEDDDEEEEEEGDEDVGERELPEVDEGEAATEPEGIFSQIIRETWLALDDADLPHGANFGDFLDTRRFDDLLDHLAETDSSRRGAPPAAASFVNNLPCVVISKEHEKHDELVCAICKDVLALGTEVNQLPCSHLYHSHCILPWLKTRNSCPLCRFELPTDDKDYEEGKQNTDGRNVIYERQQLNVMDDSFSDISDGAEAGEEDGITTHDTADSSAIRGGRGRWLFLAAAPIVSLVGMVIVLWLGRNSQIEGTRHSSAHYLSVQNQHGVRVYSSQNQRESRSRRWWCPF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01612 520 MobiDBLite consensus disorder prediction 231 262 - -
Tsu04g01612 520 MobiDBLite consensus disorder prediction 213 267 - -
Tsu04g01612 520 PANTHER OS06G0101300 PROTEIN 286 417 - -
Tsu04g01612 520 Pfam Ring finger domain 345 386 IPR001841 -
Tsu04g01612 520 SMART ring_2 345 385 IPR001841 -
Tsu04g01612 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 392 IPR013083 -
Tsu04g01612 520 ProSiteProfiles Zinc finger RING-type profile. 345 386 IPR001841 -
Tsu04g01612 520 MobiDBLite consensus disorder prediction 79 101 - -
Tsu04g01612 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 286 417 - -
Tsu04g01612 520 SUPERFAMILY RING/U-box 325 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01612 Tsu-Chr4 16989132 16991535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01612 29 520 C3H Transcription Factor Family AT5G01980 42.293 2.63e-103 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01612 - - mtr:MTR_7g074170 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01612 04 16989132 16991535 Tsu04g01612 04 16989132 16991535 ECH