Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01610 ATGGAAGGGAACGGAGCATCATCGGCATCTTCTTCATCGTCAAATTCGAGAAGATATGGATTCCCGTCGGCAGCCAGTATAATTCAGGCACCTTTATCGGCGCTTCTTGAATACTCTGGTATTCTTCCTTCCAGGTCTAATCAGCATCAACCTAACCCTGATTCTGTTCCTAATGATGGGGAGGTTTCGATTAGGATCATCGGTTCTACTGAGCAAGATAATCACAGGGAAGAAGAGGTTATACCGTTGGTGGTGAATGATGGGGCTACGGCTGCTGGGATGACGTCTTCCTCTTCACATGAGGATGTTGAGCGGACTGGGAGTGGGGATGTTGATGCAGAATcgggtggtggtggtggtggcgaTGGTAGTGGTGCCAATGGGAGAGATTCTTCTTATCAAAGATATGATATTCAGCATGCTGCTAGATGGATTGAGCAAGTTTTGCCCTTTTCTTTGCTTCTTTTGGTTGTCTTCATTCGCCAGCATTTGCAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTGCGGAAACAAACGGCCTTGAAGGGAGAGAGGAAAATGCCTGTTTTGATTGGAATTTCTGTTGCTTTTGCACTTCATGTGGTTGGTGTTTATTGGTGGTATCAAAATGATGACCTAATGTATCCGTTAGTCATGCTTCCTCCCAAGGAGATACCACCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGataCTTTGGCACGCCAGGCTGCAATGGTATTGAAGTGTATATTGTTAATGTATTATAAGAATAGCAGAGGCCGCAATTATCGTAAGCAGGGGCAAATGCTGACTTTAGTTGAATACCTCCTCCTGCTATACCGAGCCTTGTTGCCAGCACCAGTTTGGTATCGTTTCTTCTTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAGCTTACATCAGTTGTTGAAAAGGtgcaatctttctttgcttcATTGAAAGCATTGTCACGTAAAGAAGTGCACTATGGGGCTTATGCAACATCAGAGCAGGTCATTGCAGCCGGTGATCTTTGTGCGATTTGTCAAGAGAAGATGCATGCCCCAATCTTACTTCGCTGTAAACACATTTTCTGTGAAGACTGTGTGTCAGAGTGGTTTGAGAGGGAAAGAACCTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGAACTCAGGTCATTTGGTGATGGCTCTACTAGTTTGTTTTTCCAGCTATTCTGA 1284 0.4221 MEGNGASSASSSSSNSRRYGFPSAASIIQAPLSALLEYSGILPSRSNQHQPNPDSVPNDGEVSIRIIGSTEQDNHREEEVIPLVVNDGATAAGMTSSSSHEDVERTGSGDVDAESGGGGGGDGSGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKMPVLIGISVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLARQAAMVLKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPAPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFASLKALSRKEVHYGAYATSEQVIAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRSFGDGSTSLFFQLF 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01610 427 ProSitePatterns Zinc finger RING-type signature. 381 390 IPR017907 -
Tsu04g01610 427 SUPERFAMILY RING/U-box 357 409 - -
Tsu04g01610 427 Pfam Zinc finger, C3HC4 type (RING finger) 364 407 - -
Tsu04g01610 427 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 6 427 - -
Tsu04g01610 427 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 6 427 IPR044235 GO:0061630|GO:1904294
Tsu04g01610 427 MobiDBLite consensus disorder prediction 91 131 - -
Tsu04g01610 427 ProSiteProfiles Zinc finger RING-type profile. 366 404 IPR001841 -
Tsu04g01610 427 SMART ring_2 366 403 IPR001841 -
Tsu04g01610 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 341 413 IPR013083 -
Tsu04g01610 427 CDD RING-HC_RNFT1_like 365 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01610 Tsu-Chr4 16968269 16973256 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01610 1 427 C3H Transcription Factor Family AT5G01960 70.439 0.0 619
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01610 - K22379 gmx:100818546 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01610 04 16968269 16973256 Tsu04g01610 04 16968269 16973256 ECH