Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01600 ATGTGGCTTCTAAGAGTTTATGGATATGCTTTGGCTTTTACATTTTGTTTCATCACACTCATGGTAGCTTCACATAAAACACATCCTTCAGAAGTAAAAGCACTGCTAGACATCAAAAAGAGTTTGGTTGATCCCATGGACAAACTGAGGAACTGGAAAAAGACTGATCCATGTACCACAAACTGGACTGGAGTTTGGTGTTTTGATAAGAAGGGTGATGATGGTTACTTCCATGTCCATGAGCTCTACTTGATGACTTTGAATCTCTCGGGAACTTTATCACCGCAGCTTGGTCTTCTTTCGCATCTTGAGATAATGGATTTCATGTGGAACAATCTGACCGGCACAATACCAAAGGAGATTGGAAACATTAAATCACTGAGACTCTtGCTTCTGAATGGAAATCAATTATCCGGTAGTTTACCAGATGAGCTTGGCAACCTTTCAAATATGACTAGACTCCAACTGGATGAAAACCAATTGTCAGGTCCTGTGCCAGAATCGTTTGCCAACTTGGTCAATGTTAGACACCTTCACATGAACAACAACTCATTCAGTGGTCAAATTACACCCAAACTCTCAAACCTATCCAATCTTATGCATTTGCTTTTGGACAACAATAACTTATCTGGAAATCTTCCACCAGAATTATCGAAGTTACAGAGTTTGGCAATACTCCAACTTGATAACAATAATTTCAGTGGGAATGGAATTCCTTCTAGCTATGAAACTTTCCACAGGCTTGTAAAACTGAGTCTAAGAAATTGTAGTCTGCAAGGACCTATTCCTAATTTGAGTTCATTACGAAATCTTACATATTTGGATCTAAGCCGGAATCAGTTTAGTGGACCTATACCACTATCTAAACTTGCAGACCATATGACAACAGTTGATCTGTCCCACAACAAACTCAATGGAACAATTCCTCGAGGCGTAGTATATCCTCATCTTCAAAGATTGCAACTAGAGAGCAATTTACTGACTGGGTCCTTCCCTACTACCATATGGCAGAATATATCCTTCAGCAGAAAGGCGAAACTTATAATTGATATTGGTAATAACTTACTTTCTGACATTTTTGGAGATCTGAATCCCCCAGCAAATGTTACCTTAAGGCTTGCGGGAAATCCTGTTTGCAAGAATTCCAACATACAAAGAATTGGTCAATTTTGTGTTCTTGAAGGGCGTGACAGAGATGAAGAATTTGCAAATTCAACCATCTGTCCTATTCAATCTTGTCCATTGGATAATTTCTATGAATTTGCACCCTCCCAAATTCATTGTTATTGTGCAGCACCTATAAGAATTGGATATAGGCTAAAAAGTCCAAGTTTTTCTTACTTTCCTCCCTACAAAACAAGTTTCGAATCGTACATAACTGAGTCCTTAAACTTAAGCTTCTACCAGTTATCAATAGATTCTTATGAATGGGAAGAAGGACCTCGTCTTAGaatgtatttaaaatttttCCCTTCTTTCAACGATTCTCACTCCAACACATTCAGCCCAGACGAAGTCCGTCGCATTAATATCATCTTTTCATCATGGAGATTTCCTCGCACGGATTTTTTTGGACCATATGAACTCCTGAATGTCACTCTTCTAGGACCTTAtgcaaatataaTTGTTAATACAGCGGGCGGAAAGAGAAAAACAGGCATACTAGTTGCTATTATAATAGCAGCTGTTGCTAGTGTTTTAGCAATATCTGCAATAATCATGCTCCTAATGTTTAGAAGAAATGTGAAATACCAGCACTTGATTTCAAGGAAGCGTATGTCCTCTAATGCATGTATCAAAATAGATGGTGTGAAATCATTCACTTTGAAAGAGTTGACTCATGCTACCAACAAATTTGATATCTCAACTAAAGTCGGTGAAGGAGGTTATGGAATTGTCTATAAGGGCATTTTATCTGATGAAACATTTGTTGCCGTTAAACGAGCAGGAGAAAATTCATTACAAGGACAAAAAGAGTTCTTGACTGAGATTGAGCTTTTATCAAGGTTACATCATCGAAATCTTGTCTCACTAACTGGCTACTGTAATGAAGACGGAGAGCAGATGTTGGTTTATGAATTCATGCCCAATGGAACCCTAAGGGAATGGATTTCTGgtaaaagtaaaaaatgcaaGGAAGGCCTAAGTTTTTTCATGAGATTACAGATTGCAATGGGGGCCTCTAAAGGCATACTATACCTGCATACAGAGGCTAACCCTCCTATATACCACAGAGATATTAAAGCCAGTAACATACTTCTAGATTCTAAGTTTACAGCTAAAGTGGCTGATTTTGGATTGTCGCGGCTTATATACTCAGATGAAGATGGTCATGTACCTAATTATGTGTCAACAGTTGTAAAGGGAACACCGGGTTACCTGGACCCAGAATATATGATGACTCATAAGTTAACTGATAAAAGTGATGTATACAGTCTAGGAATTGTGTTTTTGGAGCTTTTAACCGGAATGCATCCAATATCACGCGGGAAAAACATTGTCCGCGAgGTTAATCTAGCTTGTCAATCTGGCACGATAGATTCAATTATAGATGACAGAATGGGCGAATATCCACCTGAATGCTTAGACAAGTTCTTAGCTCTAGCCCTCCGTTGCTGTGAAGACCATCCAGAAGAGAGACCATCAATGATAGATGTGGTGAGGGAATTGGAAGACATTATTGCCTTGTTACCTGAAACTGAAATTAGTTTATCAGATGTTTCCTTAGATAATTCTGGTAAAATGGCACCTTCTTCTTCGTCATCATCTGCGGCGACATCAGGATTCATTACGACGAGAAAGGACCAACAGCACATGTCGTCATATGTGTCAGGAAGTGATCTTGTCAGTGATGTCATTCCGACTATTGTTCCTCGGTGA 2880 0.3854 MWLLRVYGYALAFTFCFITLMVASHKTHPSEVKALLDIKKSLVDPMDKLRNWKKTDPCTTNWTGVWCFDKKGDDGYFHVHELYLMTLNLSGTLSPQLGLLSHLEIMDFMWNNLTGTIPKEIGNIKSLRLLLLNGNQLSGSLPDELGNLSNMTRLQLDENQLSGPVPESFANLVNVRHLHMNNNSFSGQITPKLSNLSNLMHLLLDNNNLSGNLPPELSKLQSLAILQLDNNNFSGNGIPSSYETFHRLVKLSLRNCSLQGPIPNLSSLRNLTYLDLSRNQFSGPIPLSKLADHMTTVDLSHNKLNGTIPRGVVYPHLQRLQLESNLLTGSFPTTIWQNISFSRKAKLIIDIGNNLLSDIFGDLNPPANVTLRLAGNPVCKNSNIQRIGQFCVLEGRDRDEEFANSTICPIQSCPLDNFYEFAPSQIHCYCAAPIRIGYRLKSPSFSYFPPYKTSFESYITESLNLSFYQLSIDSYEWEEGPRLRMYLKFFPSFNDSHSNTFSPDEVRRINIIFSSWRFPRTDFFGPYELLNVTLLGPYANIIVNTAGGKRKTGILVAIIIAAVASVLAISAIIMLLMFRRNVKYQHLISRKRMSSNACIKIDGVKSFTLKELTHATNKFDISTKVGEGGYGIVYKGILSDETFVAVKRAGENSLQGQKEFLTEIELLSRLHHRNLVSLTGYCNEDGEQMLVYEFMPNGTLREWISGKSKKCKEGLSFFMRLQIAMGASKGILYLHTEANPPIYHRDIKASNILLDSKFTAKVADFGLSRLIYSDEDGHVPNYVSTVVKGTPGYLDPEYMMTHKLTDKSDVYSLGIVFLELLTGMHPISRGKNIVREVNLACQSGTIDSIIDDRMGEYPPECLDKFLALALRCCEDHPEERPSMIDVVRELEDIIALLPETEISLSDVSLDNSGKMAPSSSSSSAATSGFITTRKDQQHMSSYVSGSDLVSDVIPTIVPR 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01600 959 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 926 - -
Tsu04g01600 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 742 754 IPR008271 GO:0004672|GO:0006468
Tsu04g01600 959 Gene3D Phosphorylase Kinase; domain 1 589 694 - -
Tsu04g01600 959 Gene3D Ribonuclease Inhibitor 28 193 IPR032675 -
Tsu04g01600 959 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Tsu04g01600 959 ProSiteProfiles Leucine-rich repeat profile. 270 291 IPR001611 GO:0005515
Tsu04g01600 959 SMART serkin_6 619 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01600 959 CDD STKc_IRAK 625 893 - -
Tsu04g01600 959 SUPERFAMILY L domain-like 44 388 - -
Tsu04g01600 959 ProSiteProfiles Protein kinase domain profile. 619 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01600 959 SUPERFAMILY Protein kinase-like (PK-like) 604 910 IPR011009 -
Tsu04g01600 959 ProSitePatterns Protein kinases ATP-binding region signature. 625 647 IPR017441 GO:0005524
Tsu04g01600 959 Gene3D Ribonuclease Inhibitor 194 398 IPR032675 -
Tsu04g01600 959 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 11 926 - -
Tsu04g01600 959 Gene3D Transferase(Phosphotransferase) domain 1 695 903 - -
Tsu04g01600 959 Pfam Protein kinase domain 621 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01600 Tsu-Chr4 16864151 16871959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01600 5 901 Receptor kinase-like Gene Family AT5G01950 59.227 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Tsu04g01600 Pkinase 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01600 - - gmx:100815005 1362.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01600 04 16864151 16871959 Tsu04g01600 04 16864151 16871959 ECH