Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01580 ATGGCTTCCCTACTCTCTACAACAACTGCAACTACACTTCAACACATTCACAATAAAATCTGCTTCTCTCCTCTAAAATTTACCACCTCATTTAACAATACTTTCTTAACAAATCATTTCAACAACACTCATTCTATAAGGTGCAGTGCATTTTTTGATATCATCCCTAAAGACATATTATTGAACAACACTTTTTATTTGGATAAGTTTCAGACTTTGAGTGAGAACTTATCAGACATGCAAAGGTTAGAAATTTTGGTCTTTGTTGGGTTATCATGGTTATACTTAACTGCAAGACCAGGTGTTCTTTTTGGTGCTATTGATGCATACCTTTTGGCTCCAATGCAATTGGTTTTGGATAGTTTATCTGGAAGGAGAAACATGAAGAGAAGTGATTTCTTGATTGGTGGTAAGATAGGAGAAGGGTCATTTGGTGTTGTTTATTCTGCTGTTTTGGTAACAAAGATAAAAGAGAGTGAAAGAGGCAAGTTAGATGTCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCTAAAGAATTTGGTGATTTTGAAGAGTGGTTTAATTACAGACTCTCTAGAGCAGCTCCTGAAACATGTGCCAAGTTCCTTGGAAGTTTTGTAGCTGATAAAAGCAATTCACAATTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGACAGTACACTTGCTGATTACATGACAGATAAAAACTTCCCTTCAAACTTAGAGCCTGTCATGTTTGGAAGAGTCTTGCAAGGTGTAGATTCTTCTAAAAGAAATGCATTGATCATCAAGCAAATAATGCGTCAAATCATTACATCTCTTAAGAAAATTCATGACACTGGCATTGTTCACAGGGATGTAAAGCCTTCCAACTTGGTTGTTACAAGAAAAGGGCAGATCAAACTCATTGATTTTGGTGCAGCAACAGACCTTAGAATTGGAAAGAATTTTGTTCCTAATTATACTCCTTTGGATCCTGATTACTGTCCCCCTGAACTATATGTGCTACCACAAGAAACACAAAGTCTTCCTCCAGAGCCAATTGCAGCTCTACTTTCACCAATCCTGTGGCAGTTAAACAGTCCTGATCTCtttgatatgtattctgctggGATTGTACTCTTGCAAATGGCAATACCAACTTTAAGGTCTCAAGCTGCTTTAAAGAATTTCAATTTGGAAATGAGGACATTTGGATATGATTTAAACAAATGGAGAGACTCTACTCGAATGAAGTCTAACTCCGAAATACTTGACAGCGATTCTGGTAGAGGATGGGACTTAGCATCAAAGCTTATCTCCAAGAGAAGTTCCGAAAGAACACGGCGTTTATCTGCTGCTTCTGCTTTGAGGCATCCTTATTTTCTTCTAGGCGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTCAGCTTTAGCACAAAGTGA 1458 0.3711 MASLLSTTTATTLQHIHNKICFSPLKFTTSFNNTFLTNHFNNTHSIRCSAFFDIIPKDILLNNTFYLDKFQTLSENLSDMQRLEILVFVGLSWLYLTARPGVLFGAIDAYLLAPMQLVLDSLSGRRNMKRSDFLIGGKIGEGSFGVVYSAVLVTKIKESERGKLDVKSKDKVILKKVKVGIEGAKEFGDFEEWFNYRLSRAAPETCAKFLGSFVADKSNSQFTKGGKWLVWKFEGDSTLADYMTDKNFPSNLEPVMFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPSNLVVTRKGQIKLIDFGAATDLRIGKNFVPNYTPLDPDYCPPELYVLPQETQSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSQAALKNFNLEMRTFGYDLNKWRDSTRMKSNSEILDSDSGRGWDLASKLISKRSSERTRRLSAASALRHPYFLLGGDQAAAVLSKFSFSTK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01580 485 Pfam Protein kinase domain 273 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01580 485 CDD STKc_SNT7_plant 138 466 - -
Tsu04g01580 485 Gene3D Phosphorylase Kinase; domain 1 121 233 - -
Tsu04g01580 485 SUPERFAMILY Protein kinase-like (PK-like) 130 467 IPR011009 -
Tsu04g01580 485 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 483 IPR044803 GO:0004674|GO:0009579
Tsu04g01580 485 Gene3D Transferase(Phosphotransferase) domain 1 264 468 - -
Tsu04g01580 485 ProSiteProfiles Protein kinase domain profile. 133 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01580 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Tsu04g01580 485 SMART serkin_6 133 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01580 485 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01580 Tsu-Chr4 16582761 16586140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01580 133 322 MAP Kinase Kinase Kinase AT3G13530 24.352 6.81e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Tsu04g01580 Pkinase 3.6e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01580 - - gmx:100795624 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01580 04 16582761 16586140 Tsu04g01580 04 16582761 16586140 ECH