Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01572 ATGAGTTCTGATCAACCACTGCTTTCCGAACCAGATCTTGTTCCTCCTGTCATTCATCATCGCCACCGCAAATCCGGATCCCGCACTTCCTTCTTTGAGGTTGCTGCAGACTCTTCGACCACCGACCACCATAGGGAAGTTGTGTTGGCGAAAGATTGCAGCTTCCACTCCGcattttgtaataataataacaacagtGGCATCTCATCATCCTCTTTAACAGAGGCACAAAACCCTGATTCGGAGTTTCGTTTGGAATGCCCCACGCGGGAAAGGGGACTCCTGCGATCCTGGGGTGCAATGGAACTGCATGAAATTTCAACAGCTTCTGCAGTAACAACAGCTCCATCTCGTAGGATTCATCATAAAAGTGTACAGTTCGATGAACAAATTTTACATGATGATAATGCTAGGTTGATTTATATAAATGATCCTAAGAAAACGAATGATAAGTATGAGTTTACTGGGAATGAGATTCGAACTAGTAGATATACTTTTATCACATTCTTGCCTAAGAATTTATTCATTCAGTTTCATAGGGTTGCTTATTTATATTTCCTTGCTATTGCTGCACTCAATCAGCTTCCTCCGTTAGCTGTATTTGGGAGGACAGTGTCCCTTTTTCCGCTTTTGTTTGTTCTTTGTGTTACTGCTATTAAGGATGGGTATGAGGATTGGAGGAGACATAGGTCCGATAACAATGAGAACAATCGTGAGTCTTTGGTTCTTCAGTCCAGTGATTTCCGTTCCAAGGTATGGAAAAAGATTCAGGCTGGTGAGGTTGTTAAGATCTTTGCTGATGAGACCATTCCTGCTGATATGGTTTTGTTGGGTACAAGTGATCCGAGTGGGCTAGCCTATATTCAGACAATGAATTTGGATGGAGAATCAAATTTGAAGACGAGGTACGCCAAGCAGGAAACGACTTCTGCAGTATCTTCGGAGGTTTGTGATATTGCTGGGATTATTAGATGTGAGCAGCCAAACCGGAATATTTATGAGTTCACAGCTAATATGGAGTTCAACGGAATTAAGTTTTCCCTTAGCCAGTCAAACATTGTCCTGCGAGGTTGCCAACTTAAGAACACGGATTGGATAATTGGTGTTGTAGTTTATGCAGGACAGGAGACAAAAGCCATGCTCAACAGTGCGGCTTCTCCTTCCAAGAGAAGCAGACTGGAAGGTTATATGAATAGAGAAACCCTTTGGTtgtcaatttttctttttatcatgtGTTTGGTTGTGGCCCTTGGGATGTGTCTTTGGCTGGTACGTCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAAGATACATCAACAAAGGCCCGGAATATGGAAAGAAATACAAGTATTATGGGATACCAATGGAAGCGTTTTTCTCCTTTTTGAGTTCTGTTATAGTGTTCCAGATAATGATACCCATATCTCTTTACATCACAATGGAGTTGGTTCGATTGGGTCAGTCATACTTCATGATTGAAGACATGCATATGTATGACGCTAGCTCTGGATCAAGGTTTCAGTGTAGatcattaaatataaatgaagatTTGGGTCAAATACGCTATGTATTTTCAGACAAGACAGGAACACTAACAGAAAACAAGATGGAATTCCGGAGGGCTAGCGTACATGGGGATAATTATGGGAGCTCCTTGCTTGCTGCTGATGATAGTTCAGCAGCAACAGATGTTATTCTTAAACGGAGATGGAAACTCAAATCTGAAATTTCAGTGGATCCCAAACTAATGTCCGTGTTGCATAAAAACCCAAATAGAGACGAAAGAGTAGTTGCTCATGAGTTTTTTCTTACATTGGCTGCTTGTAATACTGTGATTCCTATACTTACTGATGGCGAATTTTCTGGTTGTGGAACAAGTGAATCAACTGGATATGTAGAGTGCATTGATTACCAGGGAGAATCCCCTGATGAACAAGCCCTAGTTTCTGCAGCCTCTGCATATGGATACACTCTTTTTGAGCGGACATCTGGACATATTGTTATTGACATCAATGGTGAGAAACTCAGATTGGACGTATTGGGCCTGCATGAGTTTGATAGTGTGCGAAAGAGAATGTCCGTTGTTATTCGGTTTCCTGACAACGCTGTAAAGGTGCTAGTCAAAGGAGCTGATACATCAATGTTTAGCATTTTGGCAAATGGCAGTGAGAGCCACAATAGCTTATTGCATGCAACACAGAGCCATTTGACTGAATATTCTTCGCAAGGTTTGCGCACCCTTGTAGTGGCCTCTAGAAGTCTTTCTGATGCTGAACTTGAGGAGTGGCAAAGCAGGTATGGAGAGGCAAGCACTGCCTTAACTGACAGAGCTAGTAAACTACGTCAAGCGGCAGCTCTTATAGAATGCAATTTAAATCTACTTGGAGCAACTGGAATTGAGGACAAGCTACAAGAGGGTGTACCTGAAGCCATTGAGTCCCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAACAAGAGACTGCGATTTCAATTGGTCTTTCCTGTAAGCTTCTCAGTGCAGATATGCAGCAAATTGTTATAAATGGCACTTCAGAGGAGGAATGCGGAAATCTTTTGGGTGATGCAATAGCTAAATATGGTGTGAGATCTTCAAGTAGAGGGCATCAGAATCTGAATAATAAAACCAATGCTGATCATGGTAATATTGATATTTCCAATAGTTCAAAGTCAATGAGTTTGCCTAAGTGGAATCCAGGAAAGGAAGAAGGAACTACTACTCCATTGGCACTCATCATTGACGGGAACAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTTTTTGACCTCGCAACTTCCTGTAAGGTTGTGCTGTGTTGTCGTGTTGCACCCTTGCAGAAGGCTGGAATTGTTGATCTGATAAAGAGCCGCACAGATGATATGACACTAGCCATAGGTGATGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGCGGGCAGGAAGGACGTCAAGCAGTGATGGCATCAGATTTTGCGATGGGACAATTTCGGTTCTTGAAAAGATTACTTCTTGTTCATGGGCACTGGAATTACCATCGTGTTGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGTTGATGTTATTTTGGTATATATTATGCACGGCTTTTTCTACAACTTCTGCATTAACAGATTGGAGCAGTGTATTCTATTCTGTGTTATACACATCTGTACCCACAATTTTTGTTGGTATTTTGGACAAAGACTTGAGTCATAAGACACTCTTGCAGTATCCGAAACTGTATAGTACTGGTTACAGGCAAGAAGCTTACAATATGCAATTATTTTGGATCACAATGATTGACACAGTATGGCAGAGCCTTGTTCTCTTTTACGCACCGTTGTTCACCTATAAGGATAGTTCGATTGATATATGGAGCATGGGTAGCTTGTGGACAATTGCAGTTGTTATCCTTGTAAATGCACACCTGGCTATGGACATCAACCGTTGGCTATTAATTACTCATTATGCTGTCTGGGGATCCATAATCACTACATATGGTTGCATGGTGATATTGGATTCCATACCCGTCTTTCCCAATTTCTGGACTATTTATCATCTGGCAAAGTCCCCTACGTATTGGATaacaattttgcttataatagtcgTGGCATTGCTACCTCGCTTTACTTGCAAAGTTGTTTGGCAAATCTTCTGGCCTTCAGATATCCAGATAGCAAGAGAAGCCGAGTTAATGAGAAGACGACATGATCGTTTGCAGTCAAGGCATCAAGGTTCCAGTTAA 3828 0.4109 MSSDQPLLSEPDLVPPVIHHRHRKSGSRTSFFEVAADSSTTDHHREVVLAKDCSFHSAFCNNNNNSGISSSSLTEAQNPDSEFRLECPTRERGLLRSWGAMELHEISTASAVTTAPSRRIHHKSVQFDEQILHDDNARLIYINDPKKTNDKYEFTGNEIRTSRYTFITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDNNENNRESLVLQSSDFRSKVWKKIQAGEVVKIFADETIPADMVLLGTSDPSGLAYIQTMNLDGESNLKTRYAKQETTSAVSSEVCDIAGIIRCEQPNRNIYEFTANMEFNGIKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLEGYMNRETLWLSIFLFIMCLVVALGMCLWLVRHKNQLDTLPYYRKRYINKGPEYGKKYKYYGIPMEAFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDMHMYDASSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGDNYGSSLLAADDSSAATDVILKRRWKLKSEISVDPKLMSVLHKNPNRDERVVAHEFFLTLAACNTVIPILTDGEFSGCGTSESTGYVECIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDINGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNAVKVLVKGADTSMFSILANGSESHNSLLHATQSHLTEYSSQGLRTLVVASRSLSDAELEEWQSRYGEASTALTDRASKLRQAAALIECNLNLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSADMQQIVINGTSEEECGNLLGDAIAKYGVRSSSRGHQNLNNKTNADHGNIDISNSSKSMSLPKWNPGKEEGTTTPLALIIDGNSLVYILEKELESELFDLATSCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFRFLKRLLLVHGHWNYHRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVLYTSVPTIFVGILDKDLSHKTLLQYPKLYSTGYRQEAYNMQLFWITMIDTVWQSLVLFYAPLFTYKDSSIDIWSMGSLWTIAVVILVNAHLAMDINRWLLITHYAVWGSIITTYGCMVILDSIPVFPNFWTIYHLAKSPTYWITILLIIVVALLPRFTCKVVWQIFWPSDIQIAREAELMRRRHDRLQSRHQGSS 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01572 1275 CDD P-type_ATPase_APLT_Dnf-like 156 1141 - -
Tsu04g01572 1275 Pfam Phospholipid-translocating ATPase N-terminal 140 205 IPR032631 -
Tsu04g01572 1275 SFLD p-type atpase 511 1032 IPR044492 -
Tsu04g01572 1275 PRINTS P-type cation-transporting ATPase superfamily signature 527 541 - -
Tsu04g01572 1275 PRINTS P-type cation-transporting ATPase superfamily signature 981 1000 - -
Tsu04g01572 1275 Pfam Phospholipid-translocating P-type ATPase C-terminal 1009 1249 IPR032630 -
Tsu04g01572 1275 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 460 557 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g01572 1275 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 951 1067 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu04g01572 1275 Gene3D - 636 771 IPR023299 GO:0000166
Tsu04g01572 1275 SUPERFAMILY HAD-like 514 1026 IPR036412 -
Tsu04g01572 1275 Pfam E1-E2 ATPase 242 485 - -
Tsu04g01572 1275 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 154 1256 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Tsu04g01572 1275 MobiDBLite consensus disorder prediction 881 915 - -
Tsu04g01572 1275 ProSitePatterns E1-E2 ATPases phosphorylation site. 529 535 IPR018303 -
Tsu04g01572 1275 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 533 810 IPR023299 GO:0000166
Tsu04g01572 1275 Pfam Cation transport ATPase (P-type) 644 718 - -
Tsu04g01572 1275 MobiDBLite consensus disorder prediction 881 908 - -
Tsu04g01572 1275 Gene3D - 216 382 - -
Tsu04g01572 1275 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 1248 IPR023298 -
Tsu04g01572 1275 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 127 1272 - -
Tsu04g01572 1275 SFLD C1.7: P-type atpase like 511 1032 - -
Tsu04g01572 1275 Gene3D - 794 1021 IPR023214 -
Tsu04g01572 1275 Pfam haloacid dehalogenase-like hydrolase 768 840 - -
Tsu04g01572 1275 MobiDBLite consensus disorder prediction 1 22 - -
Tsu04g01572 1275 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 127 1272 - -
Tsu04g01572 1275 SUPERFAMILY Calcium ATPase, transduction domain A 238 379 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01572 Tsu-Chr4 16529905 16537626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01572 117 1258 Primary Pumps ATPases AT5G04930 56.832 0.0 1329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01572 K14802 - gmx:100812459 2080.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01572 04 16529905 16537626 Tsu04g01572 04 16529905 16537626 ECH