Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g01569 | atggaaaatattgAAAATCTAGCTCATGGTCGTGGAAAGGTAATTGGTGAATTGTTAAGAGGTCGTGAATTAGCAAATCAACTTAGACATATTCTCAATGAAAGTGGTGATATTgatcataataataatactgaTTCAACAACACCATATGCTGAAAATCTTTTGAAAGAAGTGCTTATGACTTTTACAAATTCACTCTTGTTCTTGAACAATAACAATCTTACTTCAGATGTCTCTGATGCTCAACTCGCCAAATCTGAGGATTCTTTGGAGAGTAATTGCAAGAGTACTTCAATTGTTAAGGAAAGAAGAGGTTGTTACAAAAGAAGAAAAGTTTCACAAACATGGGAGAACGAATCTGAAAAACCAGTGGATGATGGTCATCAATGGAGAAAGTATGGCCAAAAAAAGATCCTCCACATTGATTTCCCAAGGAACTACTATAGGTGCACTCACAAATATGATCAAGGTTGCAAAGCAACAAAACAAGTGCAACAAATTCAAGAAGATCCACTTCTTCACAAAACAACATACTATGGTCATCACACTTGTAGTGCCATACAAAACCCTGagatcatagtggattcactttCTCCTACTCATCACTCTTCCATGTTCCTTAGCTTTGATAACTCTTTCCCAACACCAACCAAACAAGATTGCCCTTTTCTCTCAACTTCTTCTCATCCATCATCAACTTCATCATCAGTGAAAAGAGAGGAGTGCAAGGAAGAGATTGTTaatcctcctcctcctcctcccccTCCTTCATCTTCCCACAATGATTACCTTTCTGGACTCACTTTTGATGATTCAGAAAAACATGTCACACTATCATCAACACTTGATTCTCATGATCACCTAGGTGTCAATATTTCTGATATCTCGTATGATGATGTCCTCAATTGGCCTCTTTCTTGA | 921 | 0.342 | MENIENLAHGRGKVIGELLRGRELANQLRHILNESGDIDHNNNTDSTTPYAENLLKEVLMTFTNSLLFLNNNNLTSDVSDAQLAKSEDSLESNCKSTSIVKERRGCYKRRKVSQTWENESEKPVDDGHQWRKYGQKKILHIDFPRNYYRCTHKYDQGCKATKQVQQIQEDPLLHKTTYYGHHTCSAIQNPEIIVDSLSPTHHSSMFLSFDNSFPTPTKQDCPFLSTSSHPSSTSSSVKREECKEEIVNPPPPPPPPSSSHNDYLSGLTFDDSEKHVTLSSTLDSHDHLGVNISDISYDDVLNWPLS | 306 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g01569 | 306 | ProSiteProfiles | WRKY domain profile. | 119 | 187 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Tsu04g01569 | 306 | SMART | WRKY_cls | 124 | 186 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Tsu04g01569 | 306 | MobiDBLite | consensus disorder prediction | 220 | 266 | - | - | |
Tsu04g01569 | 306 | PANTHER | TRANSCRIPTION FACTOR WRKY FAMILY-RELATED | 12 | 300 | - | - | |
Tsu04g01569 | 306 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 12 | 300 | IPR044810 | GO:0003700 | |
Tsu04g01569 | 306 | MobiDBLite | consensus disorder prediction | 220 | 235 | - | - | |
Tsu04g01569 | 306 | Pfam | WRKY DNA -binding domain | 125 | 184 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Tsu04g01569 | 306 | SUPERFAMILY | WRKY DNA-binding domain | 122 | 185 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Tsu04g01569 | 306 | Gene3D | WRKY domain | 110 | 186 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g01569 | Tsu-Chr4 | 16515804 | 16518653 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g01569 | 13 | 207 | WRKY Transcription Factor Family | AT3G56400 | 37.321 | 2.74e-37 | 132 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Tsu04g01569 | WRKY | 3e-23 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g01569 | - | - | mtr:MTR_7g073430 | 440.654 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu04g01569 | 04 | 16515804 | 16518653 | Tsu04g01569 | 04 | 16515804 | 16518653 | ECH |