Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01559 ATGTTTTGTTCTACAAAGATGTTGAAATTCAGTAGAATATGTTTGttctttttgagtttttttggtttggttATGGTTTCAGTGTTTTCTGTTGATGATCCTGTTTTCAATGATGAAATAATGGGATTAATTGTGTTTAAAGCTGGTTTACAAGATCCTAATCATAAACTAAGTTCATGGAATGAAGATGATTACACACCTTGTAATTGGGAAGGTGTGAAATGTGATTCTTCAAACAATAGAGTTATTTCTATTGTTCTTGATGGATTCTCTCTTTCAGGACACATTGATAGAGGCTTATTGAGATTACAGTTTCTTCAAACACTTTCACTTTCTGGTAACAATTTTACAGGTTTCATAAACCCTGATTTTCCTAAACTTGGAAATTTACAAGTTGTTGACTTTAGTCATAACAATCTTAAAGGGTCAATTCCTGAAGGGTTTTTTCAACAATGTGGATCTTTGAAAACTGTTAACTTTGCTAAGAATAATCTTACAGGTAAAATTCCTGATTCTCTTAGCTTATGTAACAGTTTGACAAATGTTAACTTTtcttataatcaaatttatggAAATTTGCCATCTGAGGTGTGGTTTTTGAGAGGTTTACAATCACTTGATGTTTCAAATAACTTGCTTGAAGGAGAAATTCCTAAAGGGATTCAAAACCTTTATGATTTGAGGGAGTTGAGTTTGAAGAAAAACCGTTTTAGTGGTAGAATTCCCGAGGATATTGGTGGTTGCATAGTTTTGAAATCACTTGATTTGAGTGGTAATTTTCTCTCTGGTGGAATTCCTCAATCAATGCAAAAATTGAATTCTTGTAATTCTCTCATTTTGCAAGGAAATTCATTAACTGGTAACATTCCTGATTGGATTGGAGAGTTGAAAGATCTAGAAATATTGGATCTTTCGGAAAATAAATTTTCTGGTTGGATTCCAAAGTCATTAGGAAATCTTGAAATGCTGCAAAGATTGAATTTTTCTAGGAATCAGTTAACAGGAAACTTGCCGGATTCAATGATGAACTGTACTAAGCTTTTGGCTCTTGACATTAGTCAAAATCATTTGGATGGTAATCTTCCTTCATGGATTTTTAGGAAGGGTAATTATCATGGTCTCGAGGTTTTGGATTTGTCTTCCAATGGATTTTCTGGTGAACTTCCATCTGATATCGGTGTTCTTGGTAGTTTGAAAATCTTGAATTTGTCTACCAACTATTTCTCTGGCTCTATTCCTGTTGGTATAGGTGAACTCAAATCTTTATACATTGTTGACTTGAGTGACAATGCACTTAATGGAAGCATTCCTTTTGAAATAGAAGGTGCTATTTCACTCGGTGAATTGAGGCTACACAAGAATTCCCTTGGTGGGAGAATTCCCGAACAAATCGCGAAGTGTTCATCTCTAACAACTTTGGTTCTTTCTCACAACAAGCTTACTGGTTCAATCCCTGCAGCCATTGCAAACCTAACCAATCTTCAGCATGTAGATTTGTCGTGGAATGAGCTCTCTGGTAGTCTACCAAAGGAGCTGACAAATCTTTCCAATCTTTTATCATTTAATGTGTCCTACAACCACCTTCAAGGTGAGTTACCGGTCGGTGGGTTCTTCAACACCATCTCCTCTACATCTGTTACCGGTAACTCATTGTTGTGTGGTTCTGTTGTCAACCACTCCTGTCCATCGGTTCATCCGAAACCTATTGTCTTGAATCCCAACTCTTCTGCTTCCAACTCCAGTGTTTCCTCGAAATATCAACGACACAAGATCATTCTTAGTATTTCTGCTCTTATTGCTATTGGTGCAGCTGCTTTTATTGCAGTTGGCGTTGTGGCTATCACTTTCCTAAATATGCGTGCCCGTTCTGCAATGGAACGTTCTGCTGCTCCATTTGCATTCTCCGGTGGTGACGACTATACAAATTCTCCGGAGAATGATCCGAACTATGGCAAACTTGTCATGTTTTCTGGTGATGCAGACTTTGCTGATGGAGCTCATAATCTCCTTAATAAAGAGAGTGAAATAGGCCGTGGTGGATTTGGAGTTGTTTATCGCACTTTCCTTCGAGACGGGCATGCTGTTGCAATCAAGAAGCTGACGGTCTCAAGTTTGATCAAGTCTCAAGAAGAGTTTGAGAAGGAAGTGAAAAGATTTGGGAAAATTCGGCACCAGAATCTTGTGGCACTCGAAGGTTATTATTGGACTTCATCGTTGCAGCTTCTCATTTACGAGTACCTGTCAAGTGGTAGCTTGCATAAGCTTCTGCACGACAATAGCAACAAAAATATCTTATCTTGGCGACAAAGGTTCAAGATTATTCTCGGCATGGCAAAAGGGTTGGCACATTTGCACGAAACGAACATAATCCACTATAATCTTAAATCAACCAATGTTCTCATTGACTGTTCCGGAGAGCCAAAGATCGGTGATTTCGGCCTGGTGAAGCTCTTACCAATGCTAGACCATTGTGTGTTAAGCAGCAAAATTCAAAGTGCGCTCGGATACATGGCTCCTGAGTTTGCTTGCCGCACAGTTAAGATAACCGAGAAATGCGACGTGTACGGTTTCGGGATCCTTATTTTGGAGATAGTGACAGGAAAAAGACCTGTGGAATACATGGAAGATGATGTGGTGGTTCTGTGTGACATGGTGAGGGGTGCATTGGAAGAAGGAAAGGTTGAACAATGTATTGATGAAAGGCTTTTAGGTAATTTTGCTGCTGAAGAAGCAATTCCTGTGATAAAATTAGGGTTGATTTGTGCATCACAAGTTCCATCAAATAGGCCTGATATGAGTGAAGTTATCAACATTTTAGAGTTAATTCAGTGCCCTTCAGAAGGACAAGAGGAACTATTAGAATGA 2865 0.3798 MFCSTKMLKFSRICLFFLSFFGLVMVSVFSVDDPVFNDEIMGLIVFKAGLQDPNHKLSSWNEDDYTPCNWEGVKCDSSNNRVISIVLDGFSLSGHIDRGLLRLQFLQTLSLSGNNFTGFINPDFPKLGNLQVVDFSHNNLKGSIPEGFFQQCGSLKTVNFAKNNLTGKIPDSLSLCNSLTNVNFSYNQIYGNLPSEVWFLRGLQSLDVSNNLLEGEIPKGIQNLYDLRELSLKKNRFSGRIPEDIGGCIVLKSLDLSGNFLSGGIPQSMQKLNSCNSLILQGNSLTGNIPDWIGELKDLEILDLSENKFSGWIPKSLGNLEMLQRLNFSRNQLTGNLPDSMMNCTKLLALDISQNHLDGNLPSWIFRKGNYHGLEVLDLSSNGFSGELPSDIGVLGSLKILNLSTNYFSGSIPVGIGELKSLYIVDLSDNALNGSIPFEIEGAISLGELRLHKNSLGGRIPEQIAKCSSLTTLVLSHNKLTGSIPAAIANLTNLQHVDLSWNELSGSLPKELTNLSNLLSFNVSYNHLQGELPVGGFFNTISSTSVTGNSLLCGSVVNHSCPSVHPKPIVLNPNSSASNSSVSSKYQRHKIILSISALIAIGAAAFIAVGVVAITFLNMRARSAMERSAAPFAFSGGDDYTNSPENDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVSSLIKSQEEFEKEVKRFGKIRHQNLVALEGYYWTSSLQLLIYEYLSSGSLHKLLHDNSNKNILSWRQRFKIILGMAKGLAHLHETNIIHYNLKSTNVLIDCSGEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEIVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEQCIDERLLGNFAAEEAIPVIKLGLICASQVPSNRPDMSEVINILELIQCPSEGQEELLE 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01559 954 ProSitePatterns Protein kinases ATP-binding region signature. 676 699 IPR017441 GO:0005524
Tsu04g01559 954 CDD STKc_IRAK 676 942 - -
Tsu04g01559 954 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 23 944 - -
Tsu04g01559 954 Gene3D Transferase(Phosphotransferase) domain 1 747 951 - -
Tsu04g01559 954 SUPERFAMILY L domain-like 53 365 - -
Tsu04g01559 954 ProSiteProfiles Protein kinase domain profile. 670 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g01559 954 SUPERFAMILY Protein kinase-like (PK-like) 671 943 IPR011009 -
Tsu04g01559 954 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 23 944 - -
Tsu04g01559 954 SMART LRR_typ_2 395 419 IPR003591 -
Tsu04g01559 954 SMART LRR_typ_2 224 248 IPR003591 -
Tsu04g01559 954 SMART LRR_typ_2 491 514 IPR003591 -
Tsu04g01559 954 SMART LRR_typ_2 127 151 IPR003591 -
Tsu04g01559 954 SMART LRR_typ_2 200 223 IPR003591 -
Tsu04g01559 954 SMART LRR_typ_2 515 539 IPR003591 -
Tsu04g01559 954 SMART LRR_typ_2 320 344 IPR003591 -
Tsu04g01559 954 SMART LRR_typ_2 296 319 IPR003591 -
Tsu04g01559 954 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Tsu04g01559 954 Pfam Leucine rich repeat 445 504 IPR001611 GO:0005515
Tsu04g01559 954 Pfam Leucine rich repeat 277 333 IPR001611 GO:0005515
Tsu04g01559 954 Pfam Protein tyrosine and serine/threonine kinase 671 879 IPR001245 GO:0004672|GO:0006468
Tsu04g01559 954 Pfam Leucine Rich Repeat 106 127 IPR001611 GO:0005515
Tsu04g01559 954 Pfam Leucine Rich Repeat 251 272 IPR001611 GO:0005515
Tsu04g01559 954 Pfam Leucine Rich Repeat 203 224 IPR001611 GO:0005515
Tsu04g01559 954 SUPERFAMILY L domain-like 272 554 - -
Tsu04g01559 954 Gene3D Phosphorylase Kinase; domain 1 655 746 - -
Tsu04g01559 954 Gene3D Ribonuclease Inhibitor 316 567 IPR032675 -
Tsu04g01559 954 Gene3D Ribonuclease Inhibitor 37 315 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01559 Tsu-Chr4 16429560 16433432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01559 18 950 Receptor kinase-like Gene Family AT5G01890 60.852 0.0 1142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Tsu04g01559 PK_Tyr_Ser-Thr 9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01559 - - mtr:MTR_7g073290 1691.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01559 04 16429560 16433432 Tsu04g01559 04 16429560 16433432 ECH
Tsu04g01559 04 16429560 16433432 Tsu06g00736 06 6516793 6521046 PCT