Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01553 ATGAAAGTTAGAGATGTATATGAATCATTGGCTAGTAGGCCAAAGATGAGTGTGACCCTTAATGCTCCTTTAGGAAATTCAAATTCCTGTGGTAATAGTGTTGTTGGTGAAAAGCAACAAAGTAGTAAAACTTCAAAGAAAAATGTGTCCATGGCATCTTCAATTCATGTTGGAAGAAAATCACCTATAAGACGACGAAGGAAACATATATCTCAGCGTAATTTGCCAAAGATTACTGATCAAGAATTGCAGCAATTATCTGGAGATTTAAATTCCACAATTGTGCCATTATTTGAGAAGAGATTGACAGCCAGTGACGTTGGTCGACTCGGTCGAATGGTTCTTCCAAAATCATGTGTTGAAACATATTTTCCTCCTATTTCTCAACCAGGGGGCATTTATTTACACATTGAAGAtatgaaagggaaaaaattgaagtttaggTTTAGATTTTGGCCAAATAATAACAGCAGGATATATGTTTTAGAAGGTGTACAACCTTGGATTCAGTCTATGCAATTGCAAGCTGGAGATTTTGTAACATTTAGCAGGATGGACCCCGAAGAGAGACTGATAATAGGGTTTCGAAAGGCATCAATTTCTTCCACAGAGGTGCATGACATTACTATGCCTAATTGCAAGACAAGAGAGGAAATGCATCTGCCACAAGAATTGGTtcctaagaagaagaaaaaatgtgacATTGGATCAAAAAACAAGAGGCAGGTTCTTAATAACCATGATGCATTGATGCTGAAACTTACTTGGCAAGAGGCTCATCATTTTCTTCATCCATCCCCTACAGTTAATTCAAACATTGTTGTCATTGAGGATCATGtttttgaagaatatgaaGAACCTCCTATCATTGCAAAGAGAGGTATATTCATAAATGGTGTGATAAGTGCTCAGAATGGAGGAAGTTGGGATCTGTGGAGAATTTATGGAATCAGAGAATGGAACTTGGATAATCCATTTTTGAAAATGAACAAGATTCTTTGA 1002 0.3483 MKVRDVYESLASRPKMSVTLNAPLGNSNSCGNSVVGEKQQSSKTSKKNVSMASSIHVGRKSPIRRRRKHISQRNLPKITDQELQQLSGDLNSTIVPLFEKRLTASDVGRLGRMVLPKSCVETYFPPISQPGGIYLHIEDMKGKKLKFRFRFWPNNNSRIYVLEGVQPWIQSMQLQAGDFVTFSRMDPEERLIIGFRKASISSTEVHDITMPNCKTREEMHLPQELVPKKKKKCDIGSKNKRQVLNNHDALMLKLTWQEAHHFLHPSPTVNSNIVVIEDHVFEEYEEPPIIAKRGIFINGVISAQNGGSWDLWRIYGIREWNLDNPFLKMNKIL 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01553 333 MobiDBLite consensus disorder prediction 20 78 - -
Tsu04g01553 333 Gene3D - 76 201 IPR015300 -
Tsu04g01553 333 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 38 298 - -
Tsu04g01553 333 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 38 298 - -
Tsu04g01553 333 SMART B3_2 98 199 IPR003340 GO:0003677
Tsu04g01553 333 SUPERFAMILY DNA-binding pseudobarrel domain 95 197 IPR015300 -
Tsu04g01553 333 CDD B3_DNA 96 197 IPR003340 GO:0003677
Tsu04g01553 333 MobiDBLite consensus disorder prediction 20 55 - -
Tsu04g01553 333 ProSiteProfiles B3 DNA-binding domain profile. 98 199 IPR003340 GO:0003677
Tsu04g01553 333 Pfam B3 DNA binding domain 98 198 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01553 Tsu-Chr4 16367566 16370471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01553 50 298 B3 DNA Binding Superfamily AT4G32010 47.273 4.47e-80 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu04g01553 B3 7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01553 - - mtr:MTR_7g073240 427.557